PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000737-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 313aa    MW: 35385.6 Da    PI: 8.2802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000737-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT++Ed +l ++++ +G g W+  +++ g++R++k+c++rw++yl
  WALNUT_00000737-RA 14 RGAWTAQEDRILREYIRIHGEGKWRNMPKRAGLKRCGKSCRLRWLNYL 61
                        89********************************************97 PP
2Myb_DNA-binding53.26.9e-1767111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  WALNUT_00000737-RA  67 RGNISPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                         7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-24564IPR009057Homeodomain-like
PROSITE profilePS5129418.23961IPR017930Myb domain
SuperFamilySSF466891.58E-2812108IPR009057Homeodomain-like
SMARTSM007173.1E-141363IPR001005SANT/Myb domain
PfamPF002497.0E-151461IPR001005SANT/Myb domain
CDDcd001671.37E-101661No hitNo description
PROSITE profilePS5129425.60162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2465116IPR009057Homeodomain-like
SMARTSM007174.0E-1666114IPR001005SANT/Myb domain
PfamPF002494.2E-1567112IPR001005SANT/Myb domain
CDDcd001679.20E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTAQ EDRILREYIR IHGEGKWRNM PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGRKVQGHQ  120
NTAPHLKLSS SSVEKTLKNT NIINLSHNTN SLSLSKMNNF QVIRTKATKC SKVILAPQPG  180
NIEHFDTEKA GASVESEQYP TSNKAVEFDA FKGSSSFAST ENNQTSELQT DFNIGELCFS  240
DLLNSYFPDS GDLKYSNDSN KESSTSLKES MMFLDEMLQD WTNNNNCAQS NVASDELHSL  300
ASMLDSKGEW QVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844495.10.0PREDICTED: transcription factor MYB12-like isoform X2
TrEMBLA0A2I4GKS00.0A0A2I4GKS0_JUGRE; transcription factor MYB12-like isoform X2
STRINGEOY302971e-111(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-63MYB family protein