PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000731-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 387aa    MW: 42893 Da    PI: 5.415
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000731-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT +Ed++l+++++  G g W+  ++  g++R++k+c++rw++yl
  WALNUT_00000731-RA 14 KGAWTSQEDDILIEYIRINGEGKWRNLPKNAGLKRCGKSCRLRWLNYL 61
                        79********************************************97 PP
2Myb_DNA-binding48.42.2e-1567111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+  ++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  WALNUT_00000731-RA  67 RGNIGPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                         677789****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-22563IPR009057Homeodomain-like
PROSITE profilePS5129424.069965IPR017930Myb domain
SuperFamilySSF466892.38E-2712108IPR009057Homeodomain-like
SMARTSM007178.8E-131363IPR001005SANT/Myb domain
PfamPF002497.5E-141461IPR001005SANT/Myb domain
CDDcd001676.59E-101661No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2364116IPR009057Homeodomain-like
PROSITE profilePS5129418.65166116IPR017930Myb domain
SMARTSM007171.7E-1466114IPR001005SANT/Myb domain
PfamPF002497.1E-1467112IPR001005SANT/Myb domain
CDDcd001671.01E-1172112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGRSPCCAKE GLNKGAWTSQ EDDILIEYIR INGEGKWRNL PKNAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI GPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKVQNHQ  120
ISTTVSIPPK LSGHSDENNF PPPAVSTTPM LSGYTDENNF PPPAVSTTPM LSGYTDENNF  180
NPVPTINLMS SIDTSTLPSS PISKTCTNSN VIRTKAFRCS SKLLLTPQPN KSCKENLETN  240
VIGVGLMPMD GQHHSVNKPT ELSGAFDELL SLVTTTPTPT GSSGDHNNNQ SSDLLMNFNV  300
GDICLSDLLN SDFSGVCDFN YSDDNMSNDL SPVSADQPPL TQYSDHRDML QDWKINNSCV  360
QTMNYVAPNL QYSFSSLLNS VAEWFEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-271211625128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844443.10.0PREDICTED: myb-related protein 330-like isoform X1
TrEMBLA0A2I4GKL80.0A0A2I4GKL8_JUGRE; myb-related protein 330-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-61myb domain protein 4