PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00000640-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 365aa MW: 40404.6 Da PI: 8.4425

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00000640-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.1	3.5e-53	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelvv+yLkkk+ + +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nr+++sgyWkatg+dk+ WALNUT_00000640-RA 16 LPPGFRFHPTDEELVVHYLKKKTISAPLPI-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRTATSGYWKATGTDKP 105 79**************************.88***********988899******************999******** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl WALNUT_00000640-RA 106 VIRSgSNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 143 9967788***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-64	10	178	IPR003441	NAC domain
PROSITE profile	PS51005	61.331	16	178	IPR003441	NAC domain
Pfam	PF02365	1.3E-27	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
METSTDLSNV SQQPNLPPGF RFHPTDEELV VHYLKKKTIS APLPIAIIAE VDLYKFDPWE 60 LPAKATFGEQ EWYFFSPRDR KYPNGARPNR TATSGYWKAT GTDKPVIRSG SNQKVGVKKA 120 LVFYGGKPPK GIKTNWIMHE YRLADNKACN KPPGCHDLGN KKNSLRLDDW VLCRIYKKNN 180 TQRPMMDHQE REDSMADMIG PIPPPSNSIA VGQQHHLVKL QLANAAANYG PLENYQNTFE 240 GIVNGDHDIN SASAMCRFAS SSTTSKPSEL PMVTPSSFPL KRTLPSLYWN DDDATGSSSS 300 KKSMHLDDGD LESAASGNPS TSIAALLSQL PQNPSLHQQV MLGSIIGESI FRAPCSQLPG 360 LNWYS

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

METSTDLSNV SQQPNLPPGF RFHPTDEELV VHYLKKKTIS APLPIAIIAE VDLYKFDPWE  60
LPAKATFGEQ EWYFFSPRDR KYPNGARPNR TATSGYWKAT GTDKPVIRSG SNQKVGVKKA  120
LVFYGGKPPK GIKTNWIMHE YRLADNKACN KPPGCHDLGN KKNSLRLDDW VLCRIYKKNN  180
TQRPMMDHQE REDSMADMIG PIPPPSNSIA VGQQHHLVKL QLANAAANYG PLENYQNTFE  240
GIVNGDHDIN SASAMCRFAS SSTTSKPSEL PMVTPSSFPL KRTLPSLYWN DDDATGSSSS  300
KKSMHLDDGD LESAASGNPS TSIAALLSQL PQNPSLHQQV MLGSIIGESI FRAPCSQLPG  360
LNWYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-72	13	181	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-72	13	181	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-72	13	181	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-72	13	181	14	168	NO APICAL MERISTEM PROTEIN
3swm_A	6e-72	13	181	17	171	NAC domain-containing protein 19
3swm_B	6e-72	13	181	17	171	NAC domain-containing protein 19
3swm_C	6e-72	13	181	17	171	NAC domain-containing protein 19
3swm_D	6e-72	13	181	17	171	NAC domain-containing protein 19
3swp_A	6e-72	13	181	17	171	NAC domain-containing protein 19
3swp_B	6e-72	13	181	17	171	NAC domain-containing protein 19
3swp_C	6e-72	13	181	17	171	NAC domain-containing protein 19
3swp_D	6e-72	13	181	17	171	NAC domain-containing protein 19
4dul_A	6e-72	13	181	14	168	NAC domain-containing protein 19
4dul_B	6e-72	13	181	14	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018851456.1	0.0	PREDICTED: NAC transcription factor 56-like
Swissprot	Q9LD44	1e-120	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A2I4H5N3	0.0	A0A2I4H5N3_JUGRE; NAC transcription factor 56-like
STRING	cassava4.1_022751m	1e-171	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1623	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-123	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]