PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00000305-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 371aa MW: 41616.7 Da PI: 6.4409 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++++ G g+W++++r g+ R++k+c++rw++yl WALNUT_00000305-RA 15 KGLWSPEEDEKLIKYISTNGHGSWSSVPRLAGLERCGKSCRLRWLNYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.6e-16 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rgr+++ E+ l ++++ lG++ W++Ia++++ gRt++++k++w++ WALNUT_00000305-RA 68 RGRFSPREEALVIELHSILGNR-WSRIAKHLP-GRTDNEVKNFWNS 111 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 6 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.987 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.94E-11 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.411 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-25 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.0E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.95E-12 | 70 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MAHRPACCNK QKVKKGLWSP EEDEKLIKYI STNGHGSWSS VPRLAGLERC GKSCRLRWLN 60 YLRPDLKRGR FSPREEALVI ELHSILGNRW SRIAKHLPGR TDNEVKNFWN STISKKLLYH 120 DAVPAFATFP LIDYIPSGLE ENENPNLILS TQPDQLLQLP PPITVLQVLD HGDQRSGQSN 180 YSPTAWFHFQ PPIPPQSDSS SSCETWSLGY NDQPNHQLDP NQQDHLNLLS PDAVPYLARF 240 PATDYPSGSE DTGLNANPNL FLNSQHDRLH LAPQITMAQA LDNGDYRLGQ KNCCPTAVHF 300 PLAVSALSDS SFKTWSLGFE NFCKGATPQG SGFINNPSIP ELPNYETNAR LECHEMPELF 360 EIVNGSINLI N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018827465.1 | 0.0 | PREDICTED: transcription factor MYB21-like | ||||
TrEMBL | A0A2I4F743 | 0.0 | A0A2I4F743_JUGRE; transcription factor MYB21-like | ||||
STRING | POPTR_0001s20370.1 | 1e-84 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3014 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 2e-66 | myb domain protein 26 |