PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000258-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 528aa    MW: 60052.7 Da    PI: 5.8389
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000258-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.92.7e-2853137187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe laL+e+r++m++++r+++ k+plWe+vs+k++e g++rs+k+Ckek+en+ k++k++ke +++r++++  ++++f+qlea
  WALNUT_00000258-RA  53 RWSRQESLALLEIRSDMDDTFRDSATKAPLWEAVSRKLAEFGYTRSAKKCKEKFENIYKYHKRTKEVRSGRSNGK--HYRFFEQLEA 137
                         8*********************************************************************96665..5*******85 PP
2trihelix100.61.2e-31365450187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k+ev aLi++r++++ +++++  k+ lWee s++m++ g+ rs+k+Ckekwen+nk++k++ke++kkr +e+s+tcpyf+ql+a
  WALNUT_00000258-RA 365 RWPKDEVDALIRLRTNLDCQYQENGPKGSLWEETSIAMKKIGYDRSAKRCKEKWENINKYFKRVKESNKKR-PEDSKTCPYFHQLDA 450
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.6E-450112IPR001005SANT/Myb domain
CDDcd122034.78E-2153117No hitNo description
PROSITE profilePS500907.22453110IPR017877Myb-like domain
PfamPF138372.4E-1853138No hitNo description
PROSITE profilePS500906.969358422IPR017877Myb-like domain
SMARTSM0071710362424IPR001005SANT/Myb domain
PfamPF138372.4E-21364451No hitNo description
CDDcd122031.06E-22365429No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MSEISNLPEN PGTSAAVDRG NEECGVSALV SVGSGDEERV GSEEGDRNWS GTRWSRQESL  60
ALLEIRSDMD DTFRDSATKA PLWEAVSRKL AEFGYTRSAK KCKEKFENIY KYHKRTKEVR  120
SGRSNGKHYR FFEQLEALDS NPQLPSPSPY QEKVQASLAE TGGIVVNTAE PTNAIQNSVQ  180
HSIMFVDNST PSTSSSLKEL EGMRKKKKKK KLTEYFEGLM KEVVEKQENL QRKLIEALDK  240
CERDRMAREE AWRMEELDRI KREREILVQE RSITTAKDAA VLAFLKQFSE QASSVQLPQE  300
STMVSMPVEK VVERQDNSHG GDVTGQGKHN GGKVLDNQED NSCVYNLEKQ ENDNRGNSIQ  360
KSSARWPKDE VDALIRLRTN LDCQYQENGP KGSLWEETSI AMKKIGYDRS AKRCKEKWEN  420
INKYFKRVKE SNKKRPEDSK TCPYFHQLDA LYTGKTTKVE KSTNSGNELK PEELLMHMMN  480
GQEQQRTESV TEDGDRENAD QIQVDKEDED RHGYQVVASD PSSTATVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202209MRKKKKKK
2204210KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827712.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-114TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2I4F7U00.0A0A2I4F7U0_JUGRE; trihelix transcription factor GT-2-like
STRINGEOX923930.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-115Trihelix family protein