PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00000247-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 334aa MW: 37432.8 Da PI: 4.5567

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00000247-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.5	8.8e-43	7	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppG+rFhPtd+elv yLk+k++g+++ ++++evdiyk+ Pw+Lp k+k+ ++ +wyf ++ ++ky++g+r nr t++g Wk+tg+d WALNUT_00000247-RA 7 LPPGYRFHPTDDELVLLYLKRKIKGERFYS-KAVAEVDIYKFAPWELPDKFKSgsGDLQWYFLCPVERKYSRGHRINRETRDGCWKKTGND 96 79***********************988.88***********6555422666***************************** PP NAM 90 kevlskkgelvglkktLvfy...........kgrapkgektdWvmheyrl 128 +v++ ++elvg kktLvf+ g++ + e+tdWvmhey+l WALNUT_00000247-RA 97 ISVHH-DKELVGSKKTLVFHknlnstaigirGGKSTQRERTDWVMHEYSL 145 9.999*******6666555555337999999*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-50	4	168	IPR003441	NAC domain
PROSITE profile	PS51005	46.117	7	168	IPR003441	NAC domain
Pfam	PF02365	4.1E-24	8	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MGKALRLPPG YRFHPTDDEL VLLYLKRKIK GERFYSKAVA EVDIYKFAPW ELPDKFKSGS 60 GDLQWYFLCP VERKYSRGHR INRETRDGCW KKTGNDISVH HDKELVGSKK TLVFHKNLNS 120 TAIGIRGGKS TQRERTDWVM HEYSLGDQYM AKEGIVKNTY VLCMIFQKEG LGPRNGAQYG 180 APFKEEEWNY DEDDDSAEAV TLAGSLPSSS SGLAAIDTKF SGGTTSESCL SEAMQSQCEG 240 FSAVLNNDAS NELSQVLGNS ILPEVLTSFK EDNPAILSED DKNKNLNPDE NTLCLSDIMG 300 DFEDFYYCEG TTWSLDDGFF DIADLDLPLD APPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-36	5	169	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-36	5	169	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-36	5	169	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-36	5	169	15	166	NO APICAL MERISTEM PROTEIN
4dul_A	7e-36	5	169	15	166	NAC domain-containing protein 19
4dul_B	7e-36	5	169	15	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018827539.1	0.0	PREDICTED: NAC domain-containing protein 82-like
Swissprot	Q9FY82	4e-66	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	A0A2I4F7B8	0.0	A0A2I4F7B8_JUGRE; NAC domain-containing protein 82-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3302	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64060.1	8e-68	NAC domain containing protein 103

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]