PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00000132-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 553aa MW: 60352.9 Da PI: 6.8398 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.7e-08 | 370 | 417 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq WALNUT_00000132-RA 370 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 417 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.9E-17 | 364 | 434 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.03E-10 | 364 | 421 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-16 | 366 | 434 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.523 | 366 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-5 | 370 | 417 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-9 | 372 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 553 aa Download sequence Send to blast |
MENEFFQNAG MHFESSASLS SIWHSLSSSA METRGTELNC MSDQSPDCLR NPSWEKSTDH 60 GIHFDSALSS IVSSPAASNT NLSHDSFVIR ELIGKLGNIG NSGDISPHSR PLLASYIGGN 120 NSANTSCYST PLNSPPKPNV PRMDHLIKEN LPSLGKSMPL SSSVAEFSAD PGFAERAAKF 180 SRFASRSFND RTSQFGQNNA EALYRSNLLV ETESLSRVSS SPSLKAVGSQ MRGQENYSSP 240 MQDRTELASS QEESTISEQI PDVETGLKGS NDLNPRKRKT ASKGKAKEPK SSPFANSTKV 300 AEANGNSNAK RCKPNETNGK ENGLVKAEEE AKGSSSSSGD EKQSKTNTKP PEPPKDYIHV 360 RARRGQATDS HSLAERVRRE KISERMKFLQ DLVPGCNKVT GKALMLDEII NYVQSLQRQV 420 EFLSMKLSSV NTRLDLNMDT LISKDIFQSS NPLPHAIFRL DSRASAFYAH QAQQDPALHS 480 NISNGTATQC SVDPLDTALC QSLSVQLPPL NGYRESVSQF PMFGEDDLQT IVQMGFGQNP 540 SQETAMQPQS FHG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018827778.1 | 0.0 | PREDICTED: transcription factor bHLH62-like | ||||
TrEMBL | A0A2I4F811 | 0.0 | A0A2I4F811_JUGRE; transcription factor bHLH62-like | ||||
STRING | EOX93799 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2530 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-102 | bHLH family protein |