PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4U38869.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | WOX | ||||||||
Protein Properties | Length: 201aa MW: 23009.8 Da PI: 9.5591 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.4 | 1.4e-09 | 37 | 74 | 2 | 37 |
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl 37 r+R+t+t++q+++L+el+ + r p+a+++ee++++l Jcr4U38869.10 37 RRRWTPTPDQIRILKELYDNrgVRSPNADQIEEISARL 74 89*****************7789*************98 PP | |||||||
2 | Wus_type_Homeobox | 57.4 | 3.4e-19 | 36 | 79 | 2 | 44 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGk 44 +r RWtPtp+Qi+iL+ely+ +G+r+Pn+++i++i+a+L++yGk Jcr4U38869.10 36 TRRRWTPTPDQIRILKELYDnRGVRSPNADQIEEISARLRQYGK 79 689****************979*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.97E-5 | 30 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.7E-7 | 37 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00872 | 37 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGSNQQQVQQ QQHHQLANEE NSGVGSAKGS FLCRKTRRRW TPTPDQIRIL KELYDNRGVR 60 SPNADQIEEI SARLRQYGKX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXP MQQQQQQQQQ 120 QQQQQQQQST ASATVKPDQD LSFYNKYPSF TSPGFSSSAS PSSNSGFTVG QMGNYGYGYV 180 TMEKSFRVSN DDQERVYGFV S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012065769.1 | 8e-69 | protein WUSCHEL | ||||
TrEMBL | A0A067LEE5 | 2e-67 | A0A067LEE5_JATCU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8241 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 3e-18 | WOX family protein |