PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4U32430.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 55aa MW: 6269.51 Da PI: 10.9891 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.1 | 2e-27 | 9 | 54 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 k+i+n + rqvtfskRr g++KKAeELSvLCdaeva+i+fs tgkl Jcr4U32430.10 9 KKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKL 54 68*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.217 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.7E-31 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-26 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-25 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-26 | 38 | 55 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 55 aa Download sequence Send to blast |
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELSVLCD AEVALIVFSA TGKLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-17 | 1 | 55 | 1 | 55 | MEF2C |
5f28_B | 5e-17 | 1 | 55 | 1 | 55 | MEF2C |
5f28_C | 5e-17 | 1 | 55 | 1 | 55 | MEF2C |
5f28_D | 5e-17 | 1 | 55 | 1 | 55 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering. {ECO:0000269|PubMed:12451184, ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:12881501, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18466303, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by vernalization in a FLC-independent manner. Repressed by the floral homeotic genes AP1, LFY and SEP3 in emerging floral meristems to establish a floral identity and prevent inflorescence fate. Up-regulated at the shoot apex by SOC1. {ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067997.1 | 2e-30 | MADS-box protein AGL24 | ||||
Refseq | XP_012067998.1 | 2e-30 | MADS-box protein AGL24 | ||||
Refseq | XP_012067999.1 | 2e-30 | MADS-box protein AGL24 | ||||
Refseq | XP_012466788.1 | 1e-30 | PREDICTED: MADS-box protein SVP-like isoform X3 | ||||
Refseq | XP_020533699.1 | 2e-30 | MADS-box protein AGL24 | ||||
Swissprot | O82794 | 2e-29 | AGL24_ARATH; MADS-box protein AGL24 | ||||
TrEMBL | A0A2P5RRU2 | 2e-29 | A0A2P5RRU2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.002G142700.1 | 7e-30 | (Gossypium raimondii) | ||||
STRING | POPTR_0002s10570.1 | 4e-30 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 1e-31 | AGAMOUS-like 24 |