PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4U31786.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 103aa MW: 12092.6 Da PI: 9.4408

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4U31786.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.1	1.5e-15	2	49	38	87
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 ++e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Jcr4U31786.10 2 CEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 49 89****************************98..55667*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.4E-10	3	50	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MCEEHGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL YGETSNSASI 60 PETHFVNNNT NLPFHTTCTL GCLTTIFVKP VNDHQFNNKQ VHI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP229596	4e-43	KP229596.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB40) mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012066442.1	9e-50	trihelix transcription factor PTL
Swissprot	Q9LZS0	1e-31	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A067LF24	1e-48	A0A067LF24_JATCU; Uncharacterized protein
STRING	cassava4.1_005544m	4e-37	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	5e-34	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]