PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4U31454.10 | ||||||||
Common Name | JCGZ_08249, LOC105635379 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 188aa MW: 20764.7 Da PI: 10.4812 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 276.8 | 1.1e-84 | 9 | 188 | 151 | 301 |
GAGA_bind 151 kkrqrakkpkekkakkkkkksekskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtG 217 k++r+k+ k ka ++kk++ks +kvk+es+d + sk+++k dl+ln++++D+st+P+PvCsCtG Jcr4U31454.10 9 AKSRRGKRSKDAKAMPPNKKTSKSPRKVKRESEDLTkvmfgkshdwkngqdlagggddlnkqlvvSKSDWKGNDLGLNQIAFDDSTMPAPVCSCTG 104 56788999999999999999999999999999995559********************************************************** PP GAGA_bind 218 alrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 + rqCYkWGnGGWqS+CCttt+S+yPLP+++++r+aR++grKmS++af+klL++LaaeGydlsnpvDLk+hWAkHGtn+++ti+ Jcr4U31454.10 105 VHRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGYDLSNPVDLKEHWAKHGTNRYITIK 188 ***********************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 8.8E-74 | 1 | 188 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 8.5E-83 | 7 | 188 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MIWVGPEAAK SRRGKRSKDA KAMPPNKKTS KSPRKVKRES EDLTKVMFGK SHDWKNGQDL 60 AGGGDDLNKQ LVVSKSDWKG NDLGLNQIAF DDSTMPAPVC SCTGVHRQCY KWGNGGWQSS 120 CCTTTLSMYP LPAVPNKRHA RVGGRKMSGS AFSKLLSRLA AEGYDLSNPV DLKEHWAKHG 180 TNRYITIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012073849.1 | 1e-136 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_012073850.1 | 1e-136 | protein BASIC PENTACYSTEINE6 | ||||
Swissprot | Q8L999 | 1e-81 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A067KPK2 | 1e-135 | A0A067KPK2_JATCU; Uncharacterized protein | ||||
STRING | XP_002510492.1 | 1e-120 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6905 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.3 | 2e-84 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
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Entrez Gene | 105635379 |
Publications ? help Back to Top | |||
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