PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4U31024.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 457aa    MW: 49793.9 Da    PI: 8.3
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4U31024.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.91.2e-34249305259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Jcr4U31024.10 249 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 305
                    8****************************************.***************8 PP
2WRKY30.47.7e-10420443124
                    ---SS-EEEEEEE--TT-SS-EEE CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsY 24 
                    ldDgy+WrKYGqK+vk +++pr+ 
  Jcr4U31024.10 420 LDDGYRWRKYGQKVVKCNPYPRHK 443
                    59********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-31235307IPR003657WRKY domain
PROSITE profilePS5081123.801243307IPR003657WRKY domain
SuperFamilySSF1182907.19E-27246307IPR003657WRKY domain
SMARTSM007746.7E-39248306IPR003657WRKY domain
PfamPF031061.8E-26249305IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-12405446IPR003657WRKY domain
SuperFamilySSF1182905.1E-9412442IPR003657WRKY domain
PROSITE profilePS5081114.86415454IPR003657WRKY domain
SMARTSM007744.5E-4420451IPR003657WRKY domain
PfamPF031061.7E-5421454IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
QRQQQQPPLP AASSSSSPPK NSSPASSRPT TITLPPRSFN ETIFNTGSGI GVNMGLGFSP  60
GPMTLVSSFF SDSDDFKSFS QLLAGAMASP AAANNNNKLS FPSPPLLQED KSSAADVSKP  120
NNLSIVPPPP MFSLTPGLSP MALLDTPGLG LFSPQGPFGM THQQALAQVT AQAAQAHSHM  180
HVQAQYPSTL SSASTSLTQV TSVSTNTTTR QEMLTSVQDP SSSVKESSDF SYSDQRFQAS  240
SLAVDKPADD GYNWRKYGQK QVKGSEFPRS YYKCTHPNCP VKKKVERSLD GQVTEIIYKG  300
QHNHQPPQPN KRAKDAGTSN GNSDNQSNFE LASQLQGGNV NKLKDRKDQE SSQATPEHLS  360
GTSDSEEVGD TETGMKENDE DEPDRKRRNT EVRVTEPASS HRTVTEPRII VQTTSEVDLL  420
DDGYRWRKYG QKVVKCNPYP RHKNQKNYQS KCYAAFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-182483071474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4700070.0KC470007.1 Jatropha curcas WRKY transcription factor 05 (WRKY05) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020533720.10.0probable WRKY transcription factor 3
SwissprotQ9XI901e-146WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLM9TIE50.0M9TIE5_JATCU; WRKY transcription factor 05
STRINGcassava4.1_006823m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-117WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]