PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4U30989.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 519aa MW: 56592.9 Da PI: 5.9733 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.9 | 2e-24 | 194 | 236 | 2 | 44 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrC+RtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e Jcr4U30989.10 194 LEPGRCKRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKPVE 236 69**************************************986 PP | |||||||
2 | QLQ | 58.9 | 1.5e-20 | 131 | 163 | 2 | 34 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FT+aQ+ +L++Q+++yKy++a++PvPp+Ll + Jcr4U30989.10 131 PFTNAQWKELERQAMIYKYMMASVPVPPHLLIP 163 8*****************************977 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.8E-13 | 130 | 166 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.9E-14 | 131 | 163 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.083 | 131 | 166 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.727 | 193 | 237 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.1E-20 | 195 | 236 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 519 aa Download sequence Send to blast |
MTIDGFSVLD KAAKESFDSA FDDLGVKLQL QNQQHTQSFP FSNMMFVDHN DNNPYRPFPS 60 SGFGDIGPTR IKNRRCFISS NDNIGGGHSD TDRGHCAVIS SSVAGGLRSL QPFAAFKSES 120 AGGMAASLGF PFTNAQWKEL ERQAMIYKYM MASVPVPPHL LIPTSRNFPL DPTVASHHLL 180 GSGLNLKFTN GADLEPGRCK RTDGKKWRCS RDVAPDQKYC ERHMHRGRPR SRKPVELLSN 240 TNTTNNKKIR YTSAESASNN NNGVVSEFDD TLAQPYLQAP VFLDNPNCKV ANFDTSVAFA 300 SSFKEPRSMN WVVKGPGDQQ WQNTEIGLSS DSVLNPDYQE QALNLNPFGN FSRGEDQQSN 360 NQSTLFFDDK FSHGVLNDPS ANCRNRNSSV SSNGKLLNAA LSLSIDGSIS SMNEEMGQIQ 420 MGLGLIESDQ IGECCTKPMA LAPASWTEAA TPGGPLAEVL QLSSVANQLS PVAEIENGDY 480 CSTPQATAVY SPSGVVQKEL PTSFSDSSNN SVYQHLQVL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012086613.2 | 0.0 | growth-regulating factor 7 isoform X1 | ||||
TrEMBL | A0A067LEL6 | 0.0 | A0A067LEL6_JATCU; Uncharacterized protein | ||||
STRING | XP_002521932.1 | 1e-143 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7324 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24150.1 | 2e-42 | growth-regulating factor 8 |