PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4U30814.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 547aa    MW: 61388.6 Da    PI: 5.9194
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4U30814.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4025.8e-1231785472374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++ L++cA+ +++gd  +a  l+  l++++s +gdp+qRl ay++e+L+ar+  s+s++y+al++ +     ss+ ++++ ++++++P+ +f++  
  Jcr4U30814.10 178 KQILFACAQTIADGDIPRAAGLMHVLEQMVSVSGDPIQRLGAYMLEGLRARVELSGSKIYRALKCDAPV---SSDLMTYMGILFKICPYWRFAYTS 270
                    789****************************************************************98...99999999**************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN  I eave e r+HiiDf+i qG+QW+ L+q+La+Rp+gpp + iTgv++p+s   +   l+ +g++La+fA++++vpfef+  +a +  +l+ 
  Jcr4U30814.10 271 ANAVIREAVEYECRIHIIDFQIAQGTQWMYLIQSLADRPGGPPAICITGVDDPQSAhaRGGGLHIVGQKLASFADSCNVPFEFHD-AAMSGCELQR 365
                    ******************************************************99889999***********************.89999***** PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    e+Lrv+pgEa++Vn+ + lh+++desv++ ++rd++L+lvk+lsPkvv+++eqe+++n+++Fl rf e+leyy+a+f+s++a+ +r++++ri+ E+
  Jcr4U30814.10 366 EHLRVQPGEAVVVNFPYILHHMPDESVNTWNHRDRLLRLVKTLSPKVVTLIEQESNTNTKPFLPRFKETLEYYTAMFESIDAGSSRDDKQRINAEQ 461
                    ************************************************************************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++++r+ivn++acega+r+erhe ++kW+ r+++aGF+++pls+ ++  ++ llr+++ + y ++e++g+l+l+W++ ++ + SaWr
  Jcr4U30814.10 462 HCVARDIVNMIACEGADRVERHELFGKWKLRFNMAGFTQYPLSSLVTGAVRDLLREYS-RNYGLQEKDGALYLCWMNTAMATSSAWR 547
                    **********************************************************.55*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.453151528IPR005202Transcription factor GRAS
PfamPF035142.0E-120178547IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MLPEWHRFCA LICIEFAILN EALNGRDRHT NSTIHIQVLD NNALSDGGSQ GTSLSFQSYK  60
EEYFTLESSS ATTGFAVYDS PAASVSSKSP FSPQGSHSCL SDPHHSPDNT YGSPMSGSSS  120
ASDDNILMKQ KLRELEFMLL GSESDITSNY NFCFHQSDQL PKWDWTQMVE MIPRLDMKQI  180
LFACAQTIAD GDIPRAAGLM HVLEQMVSVS GDPIQRLGAY MLEGLRARVE LSGSKIYRAL  240
KCDAPVSSDL MTYMGILFKI CPYWRFAYTS ANAVIREAVE YECRIHIIDF QIAQGTQWMY  300
LIQSLADRPG GPPAICITGV DDPQSAHARG GGLHIVGQKL ASFADSCNVP FEFHDAAMSG  360
CELQREHLRV QPGEAVVVNF PYILHHMPDE SVNTWNHRDR LLRLVKTLSP KVVTLIEQES  420
NTNTKPFLPR FKETLEYYTA MFESIDAGSS RDDKQRINAE QHCVARDIVN MIACEGADRV  480
ERHELFGKWK LRFNMAGFTQ YPLSSLVTGA VRDLLREYSR NYGLQEKDGA LYLCWMNTAM  540
ATSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-541795476375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3919170.0KM391917.1 Jatropha curcas GRAS18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295632.10.0scarecrow-like protein 13
RefseqXP_012069359.10.0scarecrow-like protein 13 isoform X1
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A067KZI30.0A0A067KZI3_JATCU; GRAS18
STRINGcassava4.1_005028m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13