PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4U29916.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bZIP | ||||||||
Protein Properties | Length: 238aa MW: 26468.5 Da PI: 4.5608 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.7 | 6.9e-15 | 166 | 210 | 4 | 48 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 ++++r++kNRe+A rsR+RK+a + eLe v eLe+eN++L ke Jcr4U29916.20 166 QQKQKRMIKNRESAARSRERKQAHTIELESLVRELEEENTRLLKE 210 689**************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-10 | 163 | 221 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.726 | 165 | 210 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.4E-13 | 165 | 210 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 3.95E-20 | 167 | 209 | No hit | No description |
SuperFamily | SSF57959 | 1.56E-10 | 167 | 210 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-12 | 168 | 210 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 170 | 185 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MATTSSTNSD MPRQPSLCSS LSTLLADLQN QNQDQNQFTT TEQNPLVSTA MDDLLKNIYS 60 YPCDDHSPLP GCASKSVDEV WKEIVSGSDQ KREGNEGITL EDFLTKAGAV SEEDVKGVGV 120 PAQMEMSVGP YSVDINNHGM IMAEGGGRGR QKRRAVEEPP MDKATQQKQK RMIKNRESAA 180 RSRERKQAHT IELESLVREL EEENTRLLKE ELGPLLVKMV GEGDINFFEQ YSVQETTN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067143.1 | 1e-156 | G-box-binding factor 4 | ||||
Swissprot | P42777 | 1e-30 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | A0A067L0U0 | 1e-154 | A0A067L0U0_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_033486m | 4e-69 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2028 | 34 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03970.1 | 3e-26 | G-box binding factor 4 |