PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4U29448.40 | ||||||||
Common Name | JCGZ_16445, LOC105642151, WRKY04 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | WRKY | ||||||||
Protein Properties | Length: 215aa MW: 23205.2 Da PI: 6.6236 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.4 | 1.1e-31 | 134 | 191 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+vkg+++prsYYrCt +C+v+k ver ++dp ++++tYeg+Hnh+ Jcr4U29448.40 134 GDGFRWRKYGQKVVKGNPYPRSYYRCTGLKCNVRKYVERVSDDPGAFITTYEGKHNHD 191 6********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-32 | 119 | 193 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-28 | 127 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.166 | 128 | 193 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-36 | 133 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-25 | 135 | 191 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MQGLGIVSDG NGQDKTIALW NNHLNERNES SEGRVENQND IGIPVHLTCQ AKAHPSHDAA 60 GAGPINAGAV TSDNSCGLSG ECDDGGKGLE GDDDEPKSKR RKNDNQSNEA GIHREAAQEP 120 RPVVQNSTET EIVGDGFRWR KYGQKVVKGN PYPRSYYRCT GLKCNVRKYV ERVSDDPGAF 180 ITTYEGKHNH DMPLRGTGSA ASETNSQAPA SRSKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-32 | 124 | 193 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-32 | 124 | 193 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC470015 | 1e-169 | KC470015.1 Jatropha curcas WRKY transcription factor 04 (WRKY04) gene, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012082254.1 | 1e-159 | WRKY transcription factor 44 | ||||
Refseq | XP_012082255.1 | 1e-159 | WRKY transcription factor 44 | ||||
TrEMBL | M9TMC6 | 1e-157 | M9TMC6_JATCU; WRKY transcription factor 04.1 | ||||
STRING | cassava4.1_007976m | 1e-117 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6790 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.2 | 4e-37 | WRKY family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105642151 |
Publications ? help Back to Top | |||
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