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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Jcr4S28438.10 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 165aa MW: 18480.4 Da PI: 7.312 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 24.8 | 7e-08 | 60 | 120 | 25 | 88 |
FAR1 25 ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88
+ + +t+ C + k+ +++++ + r+r++ ++gC ak+ + + dg+ +++k++ eHnH+
Jcr4S28438.10 60 DSRSEFKTYACHRACKAGNNSHN---SMRERPSAHIGCMAKICASSQADGRLRINKVSFEHNHH 120
44455688999999888888777...999**********************************6 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.7E-5 | 61 | 120 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 165 aa Download sequence Send to blast |
FDENKSGREF GEVDMRLLLY HALGWSXMEI VHEMGSNRED GNAKETASSE EACDDEGHSD 60 SRSEFKTYAC HRACKAGNNS HNSMRERPSA HIGCMAKICA SSQADGRLRI NKVSFEHNHH 120 APSKACFLVQ HRVIQPHVKR TLEVNDFAGI RACKTFLALV GEFRG |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012065290.1 | 2e-29 | protein FAR-RED IMPAIRED RESPONSE 1 | ||||
| Refseq | XP_020532726.1 | 2e-29 | protein FAR-RED IMPAIRED RESPONSE 1 | ||||
| TrEMBL | A0A067L9B7 | 5e-28 | A0A067L9B7_JATCU; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF27077 | 2 | 3 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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