PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S26247.10
Common NameJCGZ_26182
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 60aa    MW: 6743.9 Da    PI: 10.8148
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S26247.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.37.4e-32958150
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                   +rienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gk+ e+ 
  Jcr4S26247.10  9 ERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFG 58
                   69**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.7E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.455160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-29259IPR002100Transcription factor, MADS-box
CDDcd002651.46E-35260No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-31323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-313859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
MGRGKVVLER IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKVSEFGST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-21160160MEF2C
5f28_B8e-21160160MEF2C
5f28_C8e-21160160MEF2C
5f28_D8e-21160160MEF2C
6byy_A8e-21160160MEF2 CHIMERA
6byy_B8e-21160160MEF2 CHIMERA
6byy_C8e-21160160MEF2 CHIMERA
6byy_D8e-21160160MEF2 CHIMERA
6bz1_A8e-21160160MEF2 CHIMERA
6bz1_B8e-21160160MEF2 CHIMERA
6bz1_C8e-21160160MEF2 CHIMERA
6bz1_D8e-21160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090749.16e-35MADS-box transcription factor 6 isoform X1
RefseqXP_020540648.16e-35MADS-box transcription factor 6 isoform X2
RefseqXP_022737294.13e-35MADS-box transcription factor 6-like
SwissprotQ7XUN24e-31MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLA0A067JEN48e-34A0A067JEN4_JATCU; Uncharacterized protein
STRINGEOY230333e-33(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.15e-33AGAMOUS-like 6
Publications ? help Back to Top
  1. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]
  4. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]