PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S26146.10
Common NameJCGZ_08505, LOC105630744
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 307aa    MW: 34811.2 Da    PI: 9.8696
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S26146.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.8e-082569345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E +++ +a + + ++   +W+++a++++ g+t  ++   + 
    Jcr4S26146.10 25 KWTPAENKIFENALAVYDKDtpdRWHRVAAMLP-GKTVGDVMKQYK 69
                     8********************************.***999987775 PP
2Myb_DNA-binding48.22.5e-15132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
    Jcr4S26146.10 132 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 176
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-41970IPR009057Homeodomain-like
PROSITE profilePS512938.5762176IPR017884SANT domain
SMARTSM007175.5E-92274IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-102473IPR009057Homeodomain-like
CDDcd001673.35E-72571No hitNo description
PfamPF002493.5E-62569IPR001005SANT/Myb domain
PROSITE profilePS5129420.955125181IPR017930Myb domain
SuperFamilySSF466895.46E-17127180IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-18128180IPR006447Myb domain, plants
SMARTSM007172.7E-13129179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-13129176IPR009057Homeodomain-like
CDDcd001672.75E-11132177No hitNo description
PfamPF002495.4E-13132176IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MKWEMEVLSP TSYPNWVMEE SKSTKWTPAE NKIFENALAV YDKDTPDRWH RVAAMLPGKT  60
VGDVMKQYKE LEVDISNIEA GLIPIPGYST TPFTLDWVNN NTYDGYKQSY ALGGKRSSSG  120
RPADQERKKG VPWTEEEHKL FLMGLKKYGK GDWRNISRNF VVTRTPTQVA SHAQKYFIRQ  180
LSGGKDKRRA SIHDITTVNL NEIRTPSPDN KRAPSPDQSM VLSQQTNSVA MPRTHFQWNQ  240
SNSGAATMAF NSTHGNMFMS SLPYGINSYG LKMQAHNMHR GAVHEPYIGH PQSIAFQMQS  300
AQHYPHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1726911176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068071.10.0transcription factor DIVARICATA
RefseqXP_012068079.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-146DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A067LGQ10.0A0A067LGQ1_JATCU; Uncharacterized protein
STRINGXP_002525595.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-108Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]