PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S25889.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family FAR1
Protein Properties Length: 189aa    MW: 21418.6 Da    PI: 8.2079
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S25889.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR190.91.7e-2855142290
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    fY+eYA+++GF +r+ +s+ks+++g+i++r++ C+keg+ +++k++ + + r+r+++r gC a+l vk++k gkw+vtk++ eHnH+l+
  Jcr4S25889.10  55 FYDEYARRIGFLTRIISSRKSEHDGSIISRHLACNKEGFLKSQKTA-QVRIRKRESKREGCMAMLLVKRDKVGKWVVTKFVREHNHPLV 142
                    ******************************************9998.89999***********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.6E-2655142IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MESTKADKEC LVEEKIEIAE SAIGDQTEDE ACEVDMNQEP YVGMIFESDK AAKTFYDEYA  60
RRIGFLTRII SSRKSEHDGS IISRHLACNK EGFLKSQKTA QVRIRKRESK REGCMAMLLV  120
KRDKVGKWVV TKFVREHNHP LVISSGQLTP KVALLVFGPL NSVDCIIGAS YVYYRLRHSK  180
SDDLNSIGL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065179.11e-108protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
SwissprotQ9SZL81e-24FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A067LH061e-106A0A067LH06_JATCU; Uncharacterized protein
STRINGVIT_05s0102g00390.t015e-70(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.14e-40FAR1 family protein
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]