PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S25889.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | FAR1 | ||||||||
Protein Properties | Length: 189aa MW: 21418.6 Da PI: 8.2079 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 90.9 | 1.7e-28 | 55 | 142 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GF +r+ +s+ks+++g+i++r++ C+keg+ +++k++ + + r+r+++r gC a+l vk++k gkw+vtk++ eHnH+l+ Jcr4S25889.10 55 FYDEYARRIGFLTRIISSRKSEHDGSIISRHLACNKEGFLKSQKTA-QVRIRKRESKREGCMAMLLVKRDKVGKWVVTKFVREHNHPLV 142 ******************************************9998.89999***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.6E-26 | 55 | 142 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MESTKADKEC LVEEKIEIAE SAIGDQTEDE ACEVDMNQEP YVGMIFESDK AAKTFYDEYA 60 RRIGFLTRII SSRKSEHDGS IISRHLACNK EGFLKSQKTA QVRIRKRESK REGCMAMLLV 120 KRDKVGKWVV TKFVREHNHP LVISSGQLTP KVALLVFGPL NSVDCIIGAS YVYYRLRHSK 180 SDDLNSIGL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012065179.1 | 1e-108 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
Swissprot | Q9SZL8 | 1e-24 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A067LH06 | 1e-106 | A0A067LH06_JATCU; Uncharacterized protein | ||||
STRING | VIT_05s0102g00390.t01 | 5e-70 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 4e-40 | FAR1 family protein |
Publications ? help Back to Top | |||
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