PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S24993.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 265aa    MW: 29359.2 Da    PI: 7.1522
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S24993.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.27e-16218252133
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                    C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ k
  Jcr4S24993.30 218 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANK 252
                    *******99***********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513209.37468103IPR010399Tify domain
PfamPF062002.8E-67194IPR010399Tify domain
PROSITE profilePS5101712.65146188IPR010402CCT domain
PfamPF062036.5E-15146187IPR010402CCT domain
SMARTSM004014.6E-5212257IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-10213260No hitNo description
Gene3DG3DSA:3.30.50.105.5E-13216252IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.54E-12217252No hitNo description
PfamPF003201.1E-13218252IPR000679Zinc finger, GATA-type
PROSITE patternPS003440218245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAAANPQPLQ ARPYEEHVRE PIRIEDDDGE YDDGDAMDDV DEAHMNSGVN VAEHHAGVGV  60
GGGAGLVMAS RTSELTLSFE GEVYVFPAVT PEKVVNLHPP VWDLDAFIFG RVQAVLLLLG  120
GRDIPTAVPT IEVIGDTPKR SNLSRRIASL VRFREKRKER CFDKKIRYTV RKEVAQRMHR  180
KNGQFASLKE SSGGSNWDSA QSCLQDGTPR TETVLRRCQH CGVSENNTPA MRRGPAGPRT  240
LCNACGLMWA NKVVYFGFNF FPQSM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140DTPKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527369.11e-139GATA transcription factor 24 isoform X1
TrEMBLB9SN001e-137B9SN00_RICCO; GATA transcription factor, putative
STRINGXP_002527369.11e-138(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.19e-60ZIM-like 1