PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S24290.30

Common Name

JCGZ_24533, LOC105631227

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

SRS

Protein Properties

Length: 288aa MW: 31221.4 Da PI: 8.5397

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S24290.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	186.1	1.4e-57	79	241	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklssaes 96 + C+dCGn+akk+C+++RCRtCCk rg+dCathvkstWvpa +rrerq+ + + + + + kr+re+ +++++s ++s++++ Jcr4S24290.30 79 SSRVCRDCGNRAKKECEYRRCRTCCKGRGYDCATHVKSTWVPAVRRRERQSVNGGSGGGGSCGSssgGACGGKRPREN---VTTTSNSFSTSNNNA 171 5678*******************************************99988776554444433455566777765...334444444444444 PP DUF702 97 kkeletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++ + lP++v+++avfrc+rv++++ ge+e+aYq+ v+i+GhvfkG+LydqG++e Jcr4S24290.30 172 ATSFNFDNgsnyqdasfkqsLPSQVQAPAVFRCIRVTTINGGEAEVAYQAMVNISGHVFKGFLYDQGIDE 241 44444444446777888889*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.0E-55	81	240	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.9E-25	82	124	IPR006510	Zinc finger, lateral root primordium type 1
Gene3D	G3DSA:2.30.27.10	8.6E-5	109	168	No hit	No description
TIGRFAMs	TIGR01624	5.0E-25	192	239	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MLGLHNIFFI APPPSSSATF QHQQPISSSH QITTTINDQC NISNNQDSWT TLKRYQQESS 60 FAKKDAFNIG EYNENSDSSS RVCRDCGNRA KKECEYRRCR TCCKGRGYDC ATHVKSTWVP 120 AVRRRERQSV NGGSGGGGSC GSSSGGACGG KRPRENVTTT SNSFSTSNNN AATSFNFDNG 180 SNYQDASFKQ SLPSQVQAPA VFRCIRVTTI NGGEAEVAYQ AMVNISGHVF KGFLYDQGID 240 EKNLFPCISK VPSGGRNRES TSPIVDPPNA CPASGCQRLL EGKAFATE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068664.1	0.0	protein LATERAL ROOT PRIMORDIUM 1 isoform X1
Refseq	XP_012068665.1	0.0	protein SHI RELATED SEQUENCE 6 isoform X2
Swissprot	Q94CK9	9e-51	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A067L8V1	0.0	A0A067L8V1_JATCU; Uncharacterized protein
STRING	XP_002513050.1	1e-136	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5704	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	8e-49	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Entrez Gene	105631227

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]