PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S20723.10 | ||||||||
Common Name | JCGZ_16625, LOC105642338 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 26051.4 Da PI: 8.3967 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.5e-20 | 64 | 117 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Jcr4S20723.10 64 KKKRLTSDQLESLERSFQEEVKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 117 56779************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.6 | 7.2e-38 | 63 | 154 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+++q+++LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk+++d ++ e+++L++ev +L++ l+ Jcr4S20723.10 63 EKKKRLTSDQLESLERSFQEEVKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDALKEEFDVVSVEKQKLQEEVMKLKAILR 154 69*************************************************************************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.67E-19 | 49 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.734 | 59 | 119 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-17 | 62 | 123 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.4E-17 | 64 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.03E-16 | 64 | 120 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.9E-21 | 65 | 126 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.9E-5 | 90 | 99 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 94 | 117 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.9E-5 | 99 | 115 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.8E-7 | 119 | 153 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDWHTNLGTF VSRPETSFNF LYNYNHDQYT PGMDMKHPAM AKTPHGLVVP AAMDKISFGS 60 SQEKKKRLTS DQLESLERSF QEEVKLDPDR KMKLSRELGL QPRQIAVWFQ NRRARWKAKQ 120 LERLYDALKE EFDVVSVEKQ KLQEEVMKLK AILREQATKN QVSTGYTEIS GEETVESKSV 180 AIWSSSGKPR GTSHQHQISE CNYTMNVDEY NPVSSPYWAV LPTYP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 119 | RRARWKAKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012082539.1 | 1e-170 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 9e-57 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A067JZ67 | 1e-169 | A0A067JZ67_JATCU; Uncharacterized protein | ||||
STRING | XP_002528635.1 | 1e-140 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-59 | homeobox 51 |
Link Out ? help Back to Top | |
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Entrez Gene | 105642338 |
Publications ? help Back to Top | |||
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