PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S19837.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 391aa MW: 44730.6 Da PI: 4.9718 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.2e-19 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +grWvAeI+d ++ r++lg+++taeeAa+a+++a+ l+g Jcr4S19837.10 45 RYVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAARAYDEAACLLRG 94 79*******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.55E-32 | 44 | 101 | No hit | No description |
SMART | SM00380 | 3.8E-35 | 45 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-19 | 45 | 101 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.954 | 45 | 102 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-14 | 45 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-27 | 45 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-8 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-8 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 391 aa Download sequence Send to blast |
MSLMRKRKAK STSHEEEPIN YESISWDKVL EEAVTLTGEL RPRKRYVGVR QRPSGRWVAE 60 IKDTIQKIRV WLGTYDTAEE AARAYDEAAC LLRGANTRTN FFPFSNSLKP ALPSKISNLL 120 LQRLKARNNQ DSRKAKEIHF DNFLNCTATS SLSTTSDHFD TNSDDKYFLE HPKFLKGKEL 180 SEVDHTPTSC FTRQTLDCWA DGPLGNLNES LNSNFNLENE EEKNQEVEKE KEEKIDMLKI 240 DFSIHEDASI STYYSPFDIA EEMMAPIVEE DKNYNYNNGD NEQSLMVKEI MNRLNYERRF 300 SASLYAYNGV HERLKLGYEG MEKSSNGSRS IKIESCDDKM SESNNSLRLI DINDNGEIIK 360 KKKEEEKVQD QEIAGSSSSS SSSYSKEGGG D |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 45 | 101 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020533658.1 | 0.0 | uncharacterized protein LOC105630951 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-19 | related to AP2 11 |