PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S19763.20 | ||||||||
Common Name | JCGZ_25478, LOC105646421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 220aa MW: 25022.2 Da PI: 5.9222 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 97 | 151 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Le+ F+ + +++ ++ LA++l+Lt rqV vWFqNrRa+ k Jcr4S19763.20 97 RKKLRLTKDQSALLEDSFKVHTTLNPVQKHALAEQLNLTARQVEVWFQNRRARTK 151 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121.1 | 5.8e-39 | 97 | 185 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q++lLE+sF+ +++L+p +K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+kev+eL+ Jcr4S19763.20 97 RKKLRLTKDQSALLEDSFKVHTTLNPVQKHALAEQLNLTARQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLSEENTRLKKEVQELQ-Y 185 69*************************************************************************************8.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.94E-18 | 91 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.228 | 93 | 153 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-15 | 95 | 157 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.3E-15 | 97 | 151 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 97 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.81E-15 | 97 | 154 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 128 | 151 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.0E-9 | 153 | 184 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.4E-17 | 153 | 199 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MEGQNPQEEY CNTELGLTLG LNGNIPKGQD RNNCKHSSTK SGLCLDLSFN LCPKEEKEDE 60 EEEEEEEKSI GARQGHEEHA NNKRIDFVNV DNISISRKKL RLTKDQSALL EDSFKVHTTL 120 NPVQKHALAE QLNLTARQVE VWFQNRRART KLKQTEVDCE FLKKCCESLS EENTRLKKEV 180 QELQYLKSIG TSSQLCLHFP MCPSCEKTAA FGLGCGPLHQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 101 | SRKKLRL |
2 | 145 | 153 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031172 | 2e-31 | KT031172.1 Glycine max clone HN_CCL_117 homeodomain/HOMEOBOX transcription factor (Glyma15g18320.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087666.1 | 1e-161 | homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46665 | 6e-50 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A067JXN2 | 1e-160 | A0A067JXN2_JATCU; Uncharacterized protein | ||||
STRING | XP_002527693.1 | 1e-62 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 5e-52 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Entrez Gene | 105646421 |
Publications ? help Back to Top | |||
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