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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Jcr4S19304.10 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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| Family | LBD | ||||||||
| Protein Properties | Length: 214aa MW: 22518 Da PI: 7.0691 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 43.5 | 8.9e-14 | 79 | 130 | 1 | 51 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpe 51
+CaaCk+l+++C+++C +a yfp + p+kf +v lFG + ++ l++ ++
Jcr4S19304.10 79 PCAACKILGQRCTDKCYIASYFPPTTePHKFTVVGSLFGGDDIVDCLQQNSN 130
7*********************775549******************999765 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 10.76 | 78 | 188 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 4.1E-12 | 79 | 130 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 214 aa Download sequence Send to blast |
MGNNPFFFPS TLSYSLPSFP SSSPPPSPSP SPSPSPSSNS PCPSSQSLNS PFQPCFPFPP 60 SLTSSSHVAG PPSATVSGPC AACKILGQRC TDKCYIASYF PPTTEPHKFT VVGSLFGGDD 120 IVDCLQQNSN SSSYVPLLLL LRDTSKDGTQ MHANPSKTSN INGQRQPMLA NSENSKAHSH 180 SSSSKPPLML FGTNDNKGTL TSPANHLGDN NDLE |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020536988.1 | 1e-147 | rho GTPase-activating protein gacK-like | ||||
| TrEMBL | A0A067LNX3 | 2e-88 | A0A067LNX3_JATCU; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G28500.1 | 2e-15 | LOB domain-containing protein 11 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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