PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S18999.10
Common NameJCGZ_23011, LOC105628479
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family CO-like
Protein Properties Length: 367aa    MW: 40297.2 Da    PI: 6.8772
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S18999.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.85.3e-092061338
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                   +r+C+ ++  ++  fC+ ++ +lC +C +++H g       H+
  Jcr4S18999.10 20 ARRCDSCKTAPAAAFCRADSAYLCLNCDSKIH-GanklvsrHE 61
                   689*****************************.4466666666 PP
2zf-B_box27.75.4e-0963108342
       zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                     ++C+ +e+ ++   C+ +   lC +C + +H+       H++vp+
  Jcr4S18999.10  63 VWMCEVCEQAPAAVTCKADAAALCVTCDDDIHSAnplarrHERVPV 108
                    689*****************************66899999*99986 PP
3CCT69.77.3e-24294337144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Jcr4S18999.10 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 337
                    9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.5231865IPR000315B-box-type zinc finger
SMARTSM003362.1E-121865IPR000315B-box-type zinc finger
PfamPF006439.9E-72062IPR000315B-box-type zinc finger
CDDcd000211.73E-82165No hitNo description
PROSITE profilePS5011910.92161108IPR000315B-box-type zinc finger
PfamPF006435.3E-763108IPR000315B-box-type zinc finger
CDDcd000217.71E-964108No hitNo description
SMARTSM003364.8E-1066108IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787294336IPR010402CCT domain
PfamPF062035.6E-18294336IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGIELETLKS LAGGWSSVSA RRCDSCKTAP AAAFCRADSA YLCLNCDSKI HGANKLVSRH  60
ERVWMCEVCE QAPAAVTCKA DAAALCVTCD DDIHSANPLA RRHERVPVEP FFDSADSIVK  120
SSPFNFLVGG SAAGYHHHQQ QEDDMDSVSW LLPNPPSLNS KLLGIENPEM KSSDLFFPVM  180
DPFLDMDFHQ NHHTAATDSV VPVQTKPSPM PIINNEICYD VDFCRSKLSS LNYPTQSISQ  240
SVSSSSVDVG VVPDGNSMSD ISYPFGQNIN NSAGPNVSIS ATASQASQAP GIDREARVLR  300
YREKRKNRKF EKTIRYASRK AYAETRPRIK GRFAKRTEIE SDMNHLYGSP SSVGFISDSR  360
YGVVPSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065281.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-130COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A067L9B20.0A0A067L9B2_JATCU; Uncharacterized protein
STRINGXP_002533687.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-119CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]