PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S18329.10
Common NameJCGZ_12570
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRF
Protein Properties Length: 341aa    MW: 37562.9 Da    PI: 9.8436
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S18329.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.64.5e-23151195145
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    d+epgrCrRtDGKkWRCsr++++++k+CE+H++rgr rsrk++e+
  Jcr4S18329.10 151 DSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRKPVEA 195
                    689***************************************996 PP
2QLQ53.76.3e-1977111236
            QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                    aFTa+Q ++Lk+Q+l+yKy++a++PvP +Ll +++
  Jcr4S18329.10  77 AFTASQRMELKQQALIYKYISASVPVPDNLLIPLK 111
                    8******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.1E-976112IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.7E-1477110IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.57677112IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.844151195IPR014977WRC domain
PfamPF088794.6E-20153194IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MLLNHLRAPP LLTPTGSLVS GSSSSLKPES ASPFWNGDDG LMERSGQSYT AFPYYRSASY  60
SRSIDYGREN LNGVTVAFTA SQRMELKQQA LIYKYISASV PVPDNLLIPL KSNLRPHPYG  120
LSAPSAGFFP SNSLGWSSLR LGYMGSSTSR DSEPGRCRRT DGKKWRCSRD TVADQKYCEK  180
HMNRGRYRSR KPVEAQTAAH ATNTNNIMPV TVISGRPIHA IPQLQQSKNE ETANNSGIYG  240
NCDPFLSFWN DDHGWLNNNN NNNNNNNNNN KQLKSDHWTQ LSMSNPIATS AMQERASLSP  300
LRSSSVLGKK MDELTQKQSY SAVGGPLGEV LNASFACNGG K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079596.20.0growth-regulating factor 2
TrEMBLA0A067KJV60.0A0A067KJV6_JATCU; Uncharacterized protein
STRINGPOPTR_0007s14720.16e-64(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.16e-44growth-regulating factor 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]