PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S18153.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Nin-like
Protein Properties Length: 145aa    MW: 16715.3 Da    PI: 10.8093
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S18153.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.85.3e-293586152
         RWP-RK  1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                   aek+isl+ l++yF+ ++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++
  Jcr4S18153.10 35 AEKTISLQILRQYFARSLKDAAKSLGVCPTTVKRICRQHGINRWPSRKIKKV 86
                   589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.57425106IPR003035RWP-RK domain
PfamPF020422.3E-253886IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MDKAKENFTF VSRECLKEEH EEEFKVISEK RQTKAEKTIS LQILRQYFAR SLKDAAKSLG  60
VCPTTVKRIC RQHGINRWPS RKIKKVNRSL KKLQLVVNSI RSDFGTEKSK IKQNTKALAR  120
SSHAIQHSRA GIKENQYGDS EPSMP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021656308.14e-38protein NLP2-like
RefseqXP_021656309.14e-38protein NLP2-like
RefseqXP_021656310.14e-38protein NLP2-like
SwissprotQ7X9B94e-34NLP2_ARATH; Protein NLP2
TrEMBLA0A067LB882e-45A0A067LB88_JATCU; Uncharacterized protein
STRINGLus100239307e-38(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.14e-35Nin-like family protein