PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S16855.10
Common NameJCGZ_23624
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Trihelix
Protein Properties Length: 531aa    MW: 60755.3 Da    PI: 6.997
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S16855.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.88.5e-30133218187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Jcr4S16855.10 133 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 218
                    8***********************************998*******************************98..55667*******85 PP
2trihelix51.82.2e-16412501282
       trihelix   2 WtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                    Wt++ev  L+++++++e+r+ +++           +++lWee+++km   g++rs+++Ckekwe+    y +  + ++k+ +++s++  y+
  Jcr4S16855.10 412 WTDEEVTRLMQLKSSIESRFAQNEeeeeeekeneEEEALWEEIAAKMVCMGYHRSAIMCKEKWESSISNYSRKVAKKRKE-NNNSRNGCYY 501
                    **************9999999764455566666699****************************9999998888888876.4555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.17130193IPR001005SANT/Myb domain
PROSITE profilePS500906.98132191IPR017877Myb-like domain
PfamPF138373.2E-20133219No hitNo description
CDDcd122031.53E-19133198No hitNo description
PROSITE profilePS500907.584404478IPR017877Myb-like domain
SMARTSM007170.25408480IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-5408478IPR009057Homeodomain-like
PfamPF138379.7E-11411503No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MEMEDHTHHN QYTVDLRQFI SGGPTHHFPS IPQPHPPPTE LYRNLQPQTH HYDMMMLLPR  60
GGGGGGGLHD FHSESTAAAG PPCMAVAAPP PSGGGATGSS GNTTVATAAA TPTLSGLEAE  120
AASFGGCDGG TGRWPRQETL TLLEIRSRLD SKFKEANQKG PLWDEVSRIM CEEHGYQRSG  180
KKCREKFENL YKYYKKTKEG KAGRQDGKHY RFFRQLEALY GETSNSASIP ETHFVNNNTN  240
LPFHTTCTTQ SNNQETNFHS QNKLCDSLSL SNSSEFDTCS SDEDNNLSTA TLMENDSIEK  300
RRKRRDGKSW KAKIKEFIDS QMRKLIHRQE AWLEKLTQTL EQKEQERIAR EEEWRQQEAA  360
RIDREHKFWA KERAWIEARD AALMDTLRKL TGKEIQNQSE KCQSGNEKCG NWTDEEVTRL  420
MQLKSSIESR FAQNEEEEEE EKENEEEEAL WEEIAAKMVC MGYHRSAIMC KEKWESSISN  480
YSRKVAKKRK ENNNSRNGCY YPRNDQSMYN AGASGYIDQI NRTRKSRNCK F
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066442.10.0trihelix transcription factor PTL
SwissprotQ9LZS01e-128PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A067LF240.0A0A067LF24_JATCU; Uncharacterized protein
STRINGcassava4.1_004704m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-108Trihelix family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]