PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S16830.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Nin-like

Protein Properties

Length: 570aa MW: 65034 Da PI: 6.5032

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S16830.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	6.1e-29	460	511	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl+ l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Jcr4S16830.10 460 AEKTISLQILRQYFAGSLKDAAKSIGVCPTTLKRICRQHGINRWPSRKIKKV 511 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.722	448	531	IPR003035	RWP-RK domain
Pfam	PF02042	9.1E-25	463	511	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MDRGASALIN STFSSTSVDL DFIDKPFAHG SWLRTTDKVN FLESDPFICS VQYLDSYHQF 60 SRKEMENLFD NPTPVYSGIG KCVVETDTCL VQSQEYVEDS DVLIQIWVPT KIAAQNVLTT 120 TDQPYSRNPS CWSLASYRNV SKAFHLTAEE DSKGNDECPQ KYCAELYNIS GCLALPVFEQ 180 ESGTCLAVVE IVTTTQKINY HLELEIVCKA LEAVDLKSSQ DFFPFCIKTC NEFYQIAITE 240 ISKILKSVCE INNLPLALTW ALCNRQGKNE YEQVSGKYDY YISTVDSACY MADSDLFGFY 300 KACSTQYLFL DQGIVGKAFT RNKQLFATDV TSFSKTSYPL SHHARMFNLR AALAIPLANM 360 YIGSIEFVLE LFLPRDCQDI EEQKHMWDFL PIVIQQSCRN FHVIMDKAKE NFAFVSRECL 420 KEEPEEEFKV ISHWDNNESE FSEFLIEQKL KRGEKRQTKA EKTISLQILR QYFAGSLKDA 480 AKSIGVCPTT LKRICRQHGI NRWPSRKIKK VNRSLKKLQL VVNSIRSDLV TEKSKIKQNT 540 QALARSSHAI QHSRAGIKEN QYGDSEPSMP

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MDRGASALIN STFSSTSVDL DFIDKPFAHG SWLRTTDKVN FLESDPFICS VQYLDSYHQF  60
SRKEMENLFD NPTPVYSGIG KCVVETDTCL VQSQEYVEDS DVLIQIWVPT KIAAQNVLTT  120
TDQPYSRNPS CWSLASYRNV SKAFHLTAEE DSKGNDECPQ KYCAELYNIS GCLALPVFEQ  180
ESGTCLAVVE IVTTTQKINY HLELEIVCKA LEAVDLKSSQ DFFPFCIKTC NEFYQIAITE  240
ISKILKSVCE INNLPLALTW ALCNRQGKNE YEQVSGKYDY YISTVDSACY MADSDLFGFY  300
KACSTQYLFL DQGIVGKAFT RNKQLFATDV TSFSKTSYPL SHHARMFNLR AALAIPLANM  360
YIGSIEFVLE LFLPRDCQDI EEQKHMWDFL PIVIQQSCRN FHVIMDKAKE NFAFVSRECL  420
KEEPEEEFKV ISHWDNNESE FSEFLIEQKL KRGEKRQTKA EKTISLQILR QYFAGSLKDA  480
AKSIGVCPTT LKRICRQHGI NRWPSRKIKK VNRSLKKLQL VVNSIRSDLV TEKSKIKQNT  540
QALARSSHAI QHSRAGIKEN QYGDSEPSMP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020532393.1	0.0	protein NLP2-like
Swissprot	Q7X9B9	1e-131	NLP2_ARATH; Protein NLP2
TrEMBL	A0A067LB88	0.0	A0A067LB88_JATCU; Uncharacterized protein
STRING	XP_002532423.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	1e-122	Nin-like family protein