PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S16787.10
Common NameJCGZ_02738, LOC105632647
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 287aa    MW: 32141.3 Da    PI: 9.069
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S16787.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.8e-17213247135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    Cs+C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Jcr4S16787.10 213 CSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 247
                    *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.106.7E-14207244IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.9E-14207261IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.569207243IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15208271No hitNo description
CDDcd002029.73E-12212259No hitNo description
PROSITE patternPS003440213238IPR000679Zinc finger, GATA-type
PfamPF003203.4E-15213247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDFYRNVMFS GDYHQPEQVL PTPSSSSKLG CSITPISPLD DLFSAQNTEV DVSLEWLSVF  60
VEDCLSSKGN CLPPPTNTTP PAEVSVKKQE KPQHNPQSNN NSLEKFVIPG KARSKRKRVT  120
GVKTRNPLSS WSYCNQLTLN FPSSDPPLLQ QAYWLADSEL IMPKKDTTTT TTTTTKARDS  180
ELDENLEQEK VVAKESLRIL ENSNGQQQQP RRCSHCLAQR TPQWRAGPLG PKTLCNACGV  240
RYKSGRLLPE YRPAKSPTFV SYLHSNSHKK VMEMRMATSS TTTVFNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070476.10.0GATA transcription factor 7
TrEMBLA0A067KXQ60.0A0A067KXQ6_JATCU; Uncharacterized protein
STRINGcassava4.1_013059m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-38GATA transcription factor 9
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]