PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S16598.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 799aa    MW: 89604.7 Da    PI: 5.1322
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S16598.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS394.61.1e-1204217961373
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                    l++lL+ cA+avs++d++ a++lL++++e++sp+gd  qRla+yf+++L+arl++  ++ + + +++ ++++++ ++ l+a+k+  +++P+ k+s 
  Jcr4S16598.10 421 LRSLLILCAQAVSANDFRTANELLKQIREHSSPSGDGSQRLAHYFANGLEARLLGsDGTAMQNFFNSITSRRMTAADMLKAYKTHLHACPFKKLSI 516
                    6899**************************************************96677777888******************************* PP

           GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                    + aN++Il a+e+++++Hi+Df++ +G+QWp L+q L+ R++gpp+lRiTg++ p+ g   +e++eetg+rLak++e++gvpf++n+++ak++e++
  Jcr4S16598.10 517 VFANKMILHAAEKASTLHIVDFGVLYGFQWPILIQLLSMRDGGPPKLRITGIELPQRGfrPQERIEETGRRLAKYCERFGVPFDYNPIAAKNWESI 612
                    ********************************************************99************************************** PP

           GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e+L+++++E++aVn+  + + lldesv+++ +rd+vL+l+++++P+++v + ++ ++ns+ Fl+rf eal ++s+lfd+++a++pre++er+k 
  Jcr4S16598.10 613 PVEALKINRNEVVAVNCLGRFKCLLDESVEVNCPRDAVLNLIRKINPNIFVNCINNGSYNSPFFLTRFREALFHFSSLFDMFDATIPREDQERMKF 708
                    ************************************************************************************************ PP

           GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    Ere+ gre++n+vaceg+er+er et+++W+ r+ +aGFkp+pl+++++++ +  +++ + + + ++e+++++++gWk+r L++ S+W
  Jcr4S16598.10 709 EREIYGREAMNAVACEGTERVERPETYKQWQIRIARAGFKPLPLNQQVMEKCREKMKTWYHKDFVIDEDNNWMLQGWKGRILYASSCW 796
                    ************************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.447395777IPR005202Transcription factor GRAS
PfamPF035143.7E-118421796IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MIMDPKYPRL PDHTGSSILD DEIFFPNSNQ YPNTESGIQF DSFSSSLNFM NVPYDLPDSG  60
SDDLGVFFAS SLGGESLIPT FSADEQSFEP SPKWSPEGDV SSPSGDSDSS DPVLKYISQM  120
LMEENMEDKP WMFYDHLALT ATEKSLYDVL GEQYPLSISP QSSINHESPD SNNSGSGSDY  180
GGNTSNTTST TTGATTTATT TITSDFVDHP WIGDVGGSNP VSLQTSIPYD YQLQSHPQFF  240
VNPSNGLPDI GNGLVGSSAD EMVQNMFSGS ESVLQFNRGL EEASKFLPKA SQLVIDLDSY  300
KFTMGKKEEA PSVVVKEEKI ERASSPNGSR GRKNHEREDS GLDQGRNSKQ SAVYVEENDL  360
SEMFDKVLLW PPMQGKQDCC VPEAKQEVAS QVPKPDEQLN RSNGGKGRAK KQVKKKETVD  420
LRSLLILCAQ AVSANDFRTA NELLKQIREH SSPSGDGSQR LAHYFANGLE ARLLGSDGTA  480
MQNFFNSITS RRMTAADMLK AYKTHLHACP FKKLSIVFAN KMILHAAEKA STLHIVDFGV  540
LYGFQWPILI QLLSMRDGGP PKLRITGIEL PQRGFRPQER IEETGRRLAK YCERFGVPFD  600
YNPIAAKNWE SIPVEALKIN RNEVVAVNCL GRFKCLLDES VEVNCPRDAV LNLIRKINPN  660
IFVNCINNGS YNSPFFLTRF REALFHFSSL FDMFDATIPR EDQERMKFER EIYGREAMNA  720
VACEGTERVE RPETYKQWQI RIARAGFKPL PLNQQVMEKC REKMKTWYHK DFVIDEDNNW  780
MLQGWKGRIL YASSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-524047981379Protein SCARECROW
5b3h_D5e-524047981379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052590.0KM405259.1 Jatropha curcas GRAS01 protein (GRAS01) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067009.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A067LDX00.0A0A067LDX0_JATCU; GRAS01 protein
STRINGXP_002533752.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]