PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S16562.10
Common NameJCGZ_21254
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 743aa    MW: 81580.5 Da    PI: 5.7775
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S16562.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.5e-2059114156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Jcr4S16562.10  59 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114
                    688999***********************************************998 PP
2START1961.7e-612484831206
                    HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
          START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                    ela +a++el+++a+a+ep+Wv       e +n+de+l+ f+++ +      ++ea+r+s+v +m++ +lve+l+d++ qW++++     + +tle
  Jcr4S16562.10 248 ELAVAAMEELMRMAQAGEPLWVPGEnstsEVLNEDEYLRAFPRGIGprplgLRSEASRDSAVIIMNHINLVEILMDVN-QWSTMFCgivsRGMTLE 342
                    57899*****************888888899************999********************************.******999******** PP

                    EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE........... CS
          START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh........... 161
                     +s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ p    + R++++pSg++i++++ng+           
  Jcr4S16562.10 343 ILSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHVDGTWAVVDVSLDNLRPIP----ISRSRRRPSGCVIQELPNGYskvkpssfnti 434
                    ***********************************************************99....69***************************** PP

                    ....EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 162 ....skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         +v+wveh+++++r+ h+++++lv+sg+a+gak+wvatl+rqce+
  Jcr4S16562.10 435 svmnVQVIWVEHIEVDDRSLHSVYKPLVSSGVAFGAKRWVATLDRQCER 483
                    ***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-2242114IPR009057Homeodomain-like
SuperFamilySSF466894.6E-1946116IPR009057Homeodomain-like
PROSITE profilePS5007116.82756116IPR001356Homeobox domain
SMARTSM003891.8E-1857120IPR001356Homeobox domain
PfamPF000462.4E-1759114IPR001356Homeobox domain
CDDcd000861.00E-1859117No hitNo description
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PROSITE profilePS5084841.339239486IPR002913START domain
SuperFamilySSF559612.97E-30239485No hitNo description
CDDcd088751.81E-121243482No hitNo description
SMARTSM002342.0E-65248483IPR002913START domain
PfamPF018524.2E-50249483IPR002913START domain
Gene3DG3DSA:3.30.530.200.001347450IPR023393START-like domain
SuperFamilySSF559617.33E-27503734No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MFQPNMFESH HLFDMSMTPK SSENELAKLK DDDCETKSGT ETTEAPSGDD QDPNQRPKKK  60
RYHRHTQRQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKAQHERT  120
ENSILKSENE KLRAENSRYK EALGNASCPN CGGPAALGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPLSSLSHLP SHLSSRSLDL GVSNFGAQPG FVGEMYGATD LLRSITGPTE  240
AEKPMIVELA VAAMEELMRM AQAGEPLWVP GENSTSEVLN EDEYLRAFPR GIGPRPLGLR  300
SEASRDSAVI IMNHINLVEI LMDVNQWSTM FCGIVSRGMT LEILSTGVAG NYNGALQVMT  360
AEFQVPSPLV PTRENYFVRY CKQHVDGTWA VVDVSLDNLR PIPISRSRRR PSGCVIQELP  420
NGYSKVKPSS FNTISVMNVQ VIWVEHIEVD DRSLHSVYKP LVSSGVAFGA KRWVATLDRQ  480
CERLASSMAI NIPAGDLCVI TSPEGRKSML KLAERMVMSF CSGVGASTAH AWTTLSATGS  540
DDVRVMTRKS MDDPGRPPGI VLSAATSFWI PVPPKKVFEF LSDENHRSEW DILSNGGQVQ  600
EMAHIANGRD PGNYVSLLRV NSANSSQSNM LILQESCTDS TGSYVIYAPV DIAAMNIVLS  660
GGDPDYVALL PSGFAILPDG PEYNPGGSLD VGSGGALLTV AFQILVDSVP TAKLSLGSVA  720
TVNNLIKCTV ERIKAAVSSD NNA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091395.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A067JDG80.0A0A067JDG8_JATCU; Uncharacterized protein
STRINGcassava4.1_024979m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]