PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S16439.10

Common Name

JCGZ_00438, LOC105648111

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 355aa MW: 40467.7 Da PI: 7.837

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S16439.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.4	5.6e-32	63	116	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+++AtPk +l+lm+v+gL+++hvkSHLQ+YR+ Jcr4S16439.10 63 PRLRWTPELHLCFVKAVERLGGQDRATPKLVLQLMNVNGLSIAHVKSHLQMYRS 116 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-31	59	117	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.683	59	119	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-15	61	117	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-23	63	118	IPR006447	Myb domain, plants
Pfam	PF00249	6.8E-10	64	115	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MQGSEQTGCS KTRASRQNEE ESESGENDED ESRPKNGASS SNSTVEESEK KPSVRPYVRS 60 KMPRLRWTPE LHLCFVKAVE RLGGQDRATP KLVLQLMNVN GLSIAHVKSH LQMYRSKKID 120 DPSQAMSDHR HLVESGDRNI YNLSQLPMLQ GYNQHYGSNY RYGDASWNAR ESFVYNPHMG 180 RCLVDENRQG LYGTVAERIF GANNNCNNIN NHHSNCSSHC NFQSQNQKMW QTQSSSSFIT 240 DNRLLQAKLE EKSTPYDTRR HVVSDMXXXX QEFKTTFKRK AADCNLDLDL SLKLTPVDGS 300 RQSMEESEVD SELSLSLYSP SSSKLSRLKR GDQNDNNINN KEYYAKRAST LDLTI

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MQGSEQTGCS KTRASRQNEE ESESGENDED ESRPKNGASS SNSTVEESEK KPSVRPYVRS  60
KMPRLRWTPE LHLCFVKAVE RLGGQDRATP KLVLQLMNVN GLSIAHVKSH LQMYRSKKID  120
DPSQAMSDHR HLVESGDRNI YNLSQLPMLQ GYNQHYGSNY RYGDASWNAR ESFVYNPHMG  180
RCLVDENRQG LYGTVAERIF GANNNCNNIN NHHSNCSSHC NFQSQNQKMW QTQSSSSFIT  240
DNRLLQAKLE EKSTPYDTRR HVVSDMXXXX QEFKTTFKRK AADCNLDLDL SLKLTPVDGS  300
RQSMEESEVD SELSLSLYSP SSSKLSRLKR GDQNDNNINN KEYYAKRAST LDLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-18	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-18	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-18	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-18	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-18	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-18	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-18	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-18	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-18	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-18	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-18	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-18	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012089799.1	0.0	putative Myb family transcription factor At1g14600
TrEMBL	A0A067JG08	0.0	A0A067JG08_JATCU; Uncharacterized protein
STRING	cassava4.1_026842m	1e-167	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-65	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	105648111

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]