PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S16123.20 | ||||||||
Common Name | JCGZ_13676, LOC105639075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | GATA | ||||||||
Protein Properties | Length: 341aa MW: 37493.7 Da PI: 5.493 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.1 | 1.2e-18 | 258 | 291 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ + Jcr4S16123.20 258 CSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGR 291 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.9E-81 | 1 | 339 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.899 | 252 | 288 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.3E-15 | 252 | 306 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.04E-14 | 254 | 315 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-14 | 256 | 289 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.84E-14 | 257 | 305 | No hit | No description |
Pfam | PF00320 | 1.8E-16 | 258 | 291 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 258 | 283 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MECVEVALKT SISRQEMAFK FNQQDSCDDT WTVNVQNGST FDDSIVDELL DFSNEPGFIG 60 GDDEEEEEEN VCTACVSPKQ KALEADKLSN DKSSDYDFGS VPASELGVPV DDLSSLEWLS 120 HFVEDSNSEY SAPFPAVIVA AKPKQENYRF EPQNPVLITE PCFNTPVPAK ARSKRTRTSV 180 KVRNLWSSSL TESSSSSSST TSSSSSNPSS PCLVFPSPGM SHELTEKSVF YVKPPAKKLK 240 KRPAGEYAGG GSQPPRRCSH CGVQKTPQWR TGPLGAKTLC NACGVRFKSG RLFPEYRPAC 300 SPTFSSELHS NHHRKVLEMR KKKEQSDQPE TDLAPSVVPS F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012078406.1 | 0.0 | GATA transcription factor 5 | ||||
Swissprot | Q9FH57 | 5e-76 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A067KCD8 | 0.0 | A0A067KCD8_JATCU; GATA transcription factor | ||||
STRING | cassava4.1_011886m | 1e-122 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 9e-72 | GATA transcription factor 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 105639075 |
Publications ? help Back to Top | |||
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