PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S15072.10
Common NameJCGZ_17244
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 118aa    MW: 13357.7 Da    PI: 10.1143
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S15072.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.74.6e-26958150
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                   krien   rqvtf+kRr g+lKKA+ELSvLCdae+ ++ifs +gklye +
  Jcr4S15072.10  9 KRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGILIFSAHGKLYELA 58
                   79*********************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.067161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-28177IPR002100Transcription factor, MADS-box
CDDcd002657.32E-41279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-283859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MARGKVQMKR IENPVHRQVT FCKRRSGLLK KAKELSVLCD AEIGILIFSA HGKLYELATK  60
GTMQGLIERY MKPTGGSVQN EQAKETEPLV RTCVTVTDAI EEINMLKQEI NILQKRTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-16159159MEF2C
5f28_B3e-16159159MEF2C
5f28_C3e-16159159MEF2C
5f28_D3e-16159159MEF2C
6byy_A3e-16159159MEF2 CHIMERA
6byy_B3e-16159159MEF2 CHIMERA
6byy_C3e-16159159MEF2 CHIMERA
6byy_D3e-16159159MEF2 CHIMERA
6bz1_A3e-16159159MEF2 CHIMERA
6bz1_B3e-16159159MEF2 CHIMERA
6bz1_C3e-16159159MEF2 CHIMERA
6bz1_D3e-16159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5189145e-67DQ518914.1 Populus tomentosa MADS box transcription factor (MADS2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020537269.14e-79agamous-like MADS-box protein AGL12 isoform X1
RefseqXP_020537272.13e-79agamous-like MADS-box protein AGL12 isoform X2
SwissprotQ388416e-47AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A067LB561e-77A0A067LB56_JATCU; Uncharacterized protein
STRINGSolyc11g032100.1.19e-55(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-49AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  4. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]