PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S14874.10
Common NameJCGZ_08738, LOC105635795
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 387aa    MW: 42145.6 Da    PI: 6.6833
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S14874.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.92.5e-131152344
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                   i n+  r+ ++ kRr g+lKK +EL +LC++ + vii+s++ 
  Jcr4S14874.10 11 IVNDAARKASLKKRRIGLLKKVSELTTLCGVSAFVIIYSPDE 52
                   669999*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.278149IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-22294IPR002100Transcription factor, MADS-box
CDDcd002668.09E-25285No hitNo description
PRINTSPR004044.9E-5323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-131152IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MTRKKVKLVW IVNDAARKAS LKKRRIGLLK KVSELTTLCG VSAFVIIYSP DETEPMIWPS  60
RPLVEQLLMR YQNIPEIERC KKMMNQESYL KERVAKVHEQ SRKNQRKNRE VEMSYLMDKL  120
HKGNGADDFE FNELQVLIWL LEEKMKDLRK RVEYFQQVPP LPPTTSFFPP LPPPNEGPTM  180
QETGHKLTTT AGAAAGGGSG GGGGGGGVDA VGVVADDGGG GGDIRNSNLG DTMTWDQWYL  240
DIINNNDDNL AGGTKNNMMA HHPYGYNITL TGGDIGFPTG STGNIFSLSL PSSNMNIGGG  300
GNHFEMGQQS FHSIINSVSG HPFRLGLQPY QGNVDGNNGG NGIGLGMPPL ATEIEASDPG  360
MQGHFAGGSD IGPPYDVTKP WYHNFAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLVWIVNDAARKASLKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074291.10.0agamous-like MADS-box protein AGL86
TrEMBLA0A067KW680.0A0A067KW68_JATCU; Uncharacterized protein
STRINGcassava4.1_021594m1e-122(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-35AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]