PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S14744.10

Common Name

JCGZ_13556, LOC105638652

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 333aa MW: 37243.8 Da PI: 9.0767

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S14744.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59	1.2e-18	18	110	2	86
trihelix 2 WtkqevlaLiearremeerlr.rgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt +e+++Liea+r ++er r++ ++ +W++v ++++++g+ rs++qC++kw+nl ++ykki++ e++ +++ + + + +le Jcr4S14744.10 18 WTVSETMVLIEAKRMDDERRMkRSSdsegrgkPAELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKIRDYERRIAEKGDGNEASYWKLE 110 ***********966666552321333333399****************************************99776666666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.957	10	82	IPR017877	Myb-like domain
Pfam	PF13837	9.2E-13	17	93	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MADQGGHSVI RDYRKGNWTV SETMVLIEAK RMDDERRMKR SSDSEGRGKP AELRWKWVED 60 YCWRKGCLRS QNQCNDKWDN LMRDYKKIRD YERRIAEKGD GNEASYWKLE KNERKEKNLP 120 SNMLLDVYEA LVKVVERRGA QRMVTTTIGG GGGGGSASSN QNVSYMVERP ISSVHHPSLP 180 PLMQHQDSPS VPMPVLPLPP QPPPPPPMIY SQPSPAVDSD TSHEHSDSPA KRRRRKIGGE 240 GSGGTGTAGE STSSDEVGSA IAKSASIIAE AIEACEERKE RRHRDLLSLH ERRLKIEESN 300 TEINRQGINA LVDAINNLAN SILALASHNK TPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	235	KRRRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012077873.1	0.0	methyl-CpG-binding protein 2
TrEMBL	A0A067KAD8	0.0	A0A067KAD8_JATCU; Uncharacterized protein
STRING	XP_002515806.1	1e-164	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-52	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	105638652

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]