PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S14402.20
Common NameJCGZ_07975, LOC105642757
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 319aa    MW: 35509.6 Da    PI: 8.9478
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S14402.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-07261302443
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      W++ Ed  l++a k ++++   +W++Ia+ ++ g++   c+ r
    Jcr4S14402.20 261 WSAGEDIALLNALKAFPKDvamRWEKIAAAVP-GKSMAACRKR 302
                      ********************************.********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.285157198IPR017877Myb-like domain
SMARTSM007170.0011161214IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-6163202IPR009057Homeodomain-like
SMARTSM007176.5E-5257309IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-9259306IPR009057Homeodomain-like
PROSITE profilePS500906.771261302IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.6E-5261302IPR009057Homeodomain-like
CDDcd001673.44E-6261302No hitNo description
PfamPF002492.7E-6261302IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEFLDEDDRP RFVFQSRPIP SSFADQQPRQ KPLNKPLFFI TIAFSSLLLI FSIFYLQAEP  60
FKSLLFWVSV SFFIGPFAPS NVTGGDISVG QGPIVEFEPL DEEPEISSKK KAPKKRSKPI  120
RSDETVMSPI HGIEIANGSS ITEKKREALG KSTNGLVANE EEKDWTEEDL EILKKQMMKN  180
PVGKPRRWEV IAEAFNGRHR VESVIKMAKE MGERKVDGND SYAKFLKNRK PLDTRVQAEI  240
GGEESGEAKK DSEDGGGGVG WSAGEDIALL NALKAFPKDV AMRWEKIAAA VPGKSMAACR  300
KRVAELKRDF RSSKAGAES
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083119.10.0dnaJ homolog subfamily C member 2
SwissprotQ9ASQ25e-81MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A067LHU60.0A0A067LHU6_JATCU; Uncharacterized protein
STRINGXP_002528771.11e-166(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106861418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-70MYB_related family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]