PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S13810.10
Common NameJCGZ_12606
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 357aa    MW: 39934 Da    PI: 7.7799
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S13810.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.5e-12181227455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Jcr4S13810.10 181 DHILAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 227
                    5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.37177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-17181239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-10181227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-17181242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-11182231No hitNo description
SMARTSM003532.9E-14183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEIESARWFS DQDLDDYNLI HEYHMNSLAE LTTQNMATAL GENLKQSFSS ESYTSYHNFN  60
TKNTSTATAT IATTTTLSSS SIETSQTSPE KPSKLHKTNS RSSNMITANH QSPKPQILSF  120
ETSNPPPFFM TLDHSTVKPK DEAASPRNMH FQSLISKAPQ GITNNNKRPY SMTRSPSHAQ  180
DHILAERKRR EKLSQRFIAL SAIVPGLKKM DKASVLGDAI KYVKQLQERV KVLEEQTKKR  240
TVESVVLVKK SQVSTDDDSS SCDENSDGGS DSALPEIEAR ASDKDVLIRI HCDKQQGILP  300
RILNEVENLR LSITNSTVLP FGNSTLDVTI IAQMDTEFSM AMKDLVKNLR LAFLKFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-12181236863Transcription factor MYC2
5gnj_B1e-12181236863Transcription factor MYC2
5gnj_E1e-12181236863Transcription factor MYC2
5gnj_F1e-12181236863Transcription factor MYC2
5gnj_G1e-12181236863Transcription factor MYC2
5gnj_I1e-12181236863Transcription factor MYC2
5gnj_M1e-12181236863Transcription factor MYC2
5gnj_N1e-12181236863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190ERKRRE
2186191RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079497.20.0transcription factor bHLH18
TrEMBLA0A067KIQ70.0A0A067KIQ7_JATCU; Uncharacterized protein
STRINGcassava4.1_033627m1e-157(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-67bHLH family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]