PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S13202.30
Common NameJCGZ_08249, LOC105635379
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family BBR-BPC
Protein Properties Length: 347aa    MW: 38442.5 Da    PI: 10.0611
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S13202.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind390.32.8e-11913471301
      GAGA_bind   1 mdddgsre..rnkg.yye..................pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkal 74 
                    mdd g+re  r+k+ +y+                  +a +s+k     q+m+++aerda+i+ern+a+sekkaa+aerdmaf qrd+a+aern+a+
  Jcr4S13202.30   1 MDDGGHREngRHKAdQYKtaqgqysflvhsfarwlmQAqPSMK-----QIMAIMAERDAAIHERNMAISEKKAAIAERDMAFIQRDAAIAERNNAI 91 
                    99***99999***999999*******99998877763336666.....************************************************ PP

      GAGA_bind  75 verdnkllalllvensla....salpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekka 164
                    ++rd+++++l+++ensl+    s++p+g+q+++g+k++++ qq+ +  p+ ++ ++++re++++++ p++   +ea ++++ k      + k  ka
  Jcr4S13202.30  92 LDRDSAIATLQYRENSLTggnmSSCPPGCQISRGVKHMHHPQQHAQhlPHSSEVSYGTREMQTSDTVPVSPVGPEAAKSRRGK------RSKDAKA 181
                    ****************9999999********************54447999999**************988776666555444......3444444 PP

      GAGA_bind 165 kkkkkksekskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWq 231
                      ++kk++ks +kvk+es+d +                             sk+++k  dl+ln++++D+st+P+PvCsCtG+ rqCYkWGnGGWq
  Jcr4S13202.30 182 MPPNKKTSKSPRKVKRESEDLTkvmfgkshdwkngqdlagggddlnkqlvvSKSDWKGNDLGLNQIAFDDSTMPAPVCSCTGVHRQCYKWGNGGWQ 277
                    4444444455566666666533366777788999************************************************************** PP

      GAGA_bind 232 SaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                    S+CCttt+S+yPLP+++++r+aR++grKmS++af+klL++LaaeGydlsnpvDLk+hWAkHGtn+++ti+
  Jcr4S13202.30 278 SSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGYDLSNPVDLKEHWAKHGTNRYITIK 347
                    *********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.0E-1761347IPR010409GAGA-binding transcriptional activator
PfamPF062171.7E-1041347IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDDGGHRENG RHKADQYKTA QGQYSFLVHS FARWLMQAQP SMKQIMAIMA ERDAAIHERN  60
MAISEKKAAI AERDMAFIQR DAAIAERNNA ILDRDSAIAT LQYRENSLTG GNMSSCPPGC  120
QISRGVKHMH HPQQHAQHLP HSSEVSYGTR EMQTSDTVPV SPVGPEAAKS RRGKRSKDAK  180
AMPPNKKTSK SPRKVKRESE DLTKVMFGKS HDWKNGQDLA GGGDDLNKQL VVSKSDWKGN  240
DLGLNQIAFD DSTMPAPVCS CTGVHRQCYK WGNGGWQSSC CTTTLSMYPL PAVPNKRHAR  300
VGGRKMSGSA FSKLLSRLAA EGYDLSNPVD LKEHWAKHGT NRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073849.10.0protein BASIC PENTACYSTEINE6
RefseqXP_012073850.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-153BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A067KPK20.0A0A067KPK2_JATCU; Uncharacterized protein
STRINGXP_002510492.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-155basic pentacysteine 6
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]