PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S13202.20
Common NameJCGZ_08248, LOC105635378
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bZIP
Protein Properties Length: 494aa    MW: 53551.7 Da    PI: 7.222
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S13202.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.35.8e-12365423563
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    +r++r   NR++A rs +RK  +i eLe+kv++L++e ++L  ++  l+  +a+l+s++
  Jcr4S13202.20 365 RRAKRILANRLSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTVLQRDSASLTSQN 423
                    799*****************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.6E-18361425IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.174363426IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-11365422No hitNo description
PfamPF001703.6E-10365423IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.32E-11365421No hitNo description
CDDcd147032.11E-22366417No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MESGVESGGG MRILQSSFSA FGVSQMGGSS MRQSSPNIGS DNVKRIGVPP SHPNNPQIMV  60
SRSSGSSSSQ NLNRGSSHSR SLSQSAVFSI DCLPPLSPMP SQSSRSNQSD LVLTDIPMED  120
KGAGGSHGLS IPPPVTGTNG LPPRRGHRRS MSDSVPLAFS AMIQSSPQLV PIGSSRGALD  180
RSSSGRENSG MEKSSELVKR ESDWSRDGNS NIEGKSEGEV VDDLFSAYMN LDNMNALNSS  240
GTEDKDLDSR VSGSKTNGAE SSDNEVESRV KEGLKRSASG DIARATRHYR SVSMDSYMES  300
LQFDDESLKF PPLGAQGSQQ PPGNSMDGKL AKFNLEFGNV DFTEAEMKKI MANEKLTEIA  360
MADPRRAKRI LANRLSAARS KERKMRYISE LEQKVQTLQT EATTLSAQVT VLQRDSASLT  420
SQNNELKFCL QAMEQQAKLK DALNEALVAE VQRLRLAAAE LSGNPHQQLP INHQMLKLQI  480
QQPSQQKQMQ EQAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073848.10.0transcription factor VIP1
TrEMBLA0A067KLE40.0A0A067KLE4_JATCU; Uncharacterized protein
STRINGcassava4.1_005670m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22723484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-108bZIP family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]