PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S13052.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 1074aa MW: 122492 Da PI: 7.4127 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.9 | 2.6e-26 | 97 | 205 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkek.dgkwev 78 +fY+eYAk++GF + +++s++s+++g++++++fvC+++g+r+e++++ +++ r +r+ +t+Cka+++vk+++ dg+w++ Jcr4S13052.10 97 SFYKEYAKSIGFATITKASRRSRMSGKFIDAKFVCTRYGTRRETSTEmahpaidadntpsipvkRKRGRINRSWAKTDCKACMHVKRRQqDGRWVI 192 5*******************************************999**************998888899******************99****** PP FAR1 79 tkleleHnHelap 91 ++ +eHnHe++p Jcr4S13052.10 193 RSFIKEHNHEISP 205 **********975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.5E-24 | 97 | 205 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.2E-30 | 324 | 417 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.2 | 604 | 640 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.5E-6 | 615 | 642 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 9.0E-6 | 616 | 638 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1074 aa Download sequence Send to blast |
MGIDLEKPSG EYHTEDSRSN VNADMVDGGN GLHDGNRVIV DCQNIAENDK DSGPTVSGRP 60 FDTTLKVYAG DGINLNAVKN LEPHDGMEFE SKEEAFSFYK EYAKSIGFAT ITKASRRSRM 120 SGKFIDAKFV CTRYGTRRET STEMAHPAID ADNTPSIPVK RKRGRINRSW AKTDCKACMH 180 VKRRQQDGRW VIRSFIKEHN HEISPDQAYY FRGHRNLDLG NNNDDALHAI RARTKKVYVS 240 MSRRSGGYKK HENQKTNVTT QSGSIRHLSL EEGDAQVMLD YFTCMQNENP NFFYAVDLNE 300 EQRLRNMFWV DAKSRVDYGY FCDVIFFDTT YIKNDYKLPF APFIGVNHHF QCLLLGRALV 360 ADETKATYVW LMRAWLRAMG GHAPKVILTD QDKPLKEAIA EVFPDTYHGF CLWHIMSKVP 420 EKLSYVMRQH EIFMTKFNKC VFTSWTNEQF DKRWWKMVER FNLRSDLWFQ SLYEDRQRWI 480 PMFLKDKFLA GMSTAQRSES IISLFDKHMQ RKTTMKEFLE QHKAILQEKF DEEAKADFET 540 WHKQPGLKSP SPFGKQMATL YTHAIFKKFQ VEVLGVVACH PRKESEDGET KTFKVQDFEE 600 NQDFIVVWND KTSSFSCSCH LFEFNGFLCR HVLIVMQMSG VHSIPSQYIL KRWTKNAKSR 660 ETMREQLDKI ESRVDRYNDL CRRAFKLGDE GSLSQESYNI AFTALEEALR KCESVNNSIQ 720 CLMVPTSPSS NRPLDYEEVD QTNGASKTKQ KDDNSGKRLV HSEPEVITIG MHESWQQLGH 780 SSLRESGRDC SYEMQESMQG MLMDSPLQEQ LNSRASNLDG FFGPQQIVQG MGQLSSIASG 840 RDDYYSNQHN MQRLGQLNAI APIHESHYMT QQRMQGMGQL HCRSQTIPSC FDIQDNLQEM 900 DQTNVGTSQS QLHGMASKHL HPKHLSLVVA VIGVLVVVVT TMVVCGAGDC SGGSGDCGDD 960 CDGGGGVVVV SDCVGGGGGV VVVVVKWWLW LWWWWAKPVW YGMARLASES SGRAPGAPHG 1020 SSAARDSRPV TEWYQSRTCC TFWVSTRLNT HSREESKLPP CVLSPRGVEA MAES |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012092630.1 | 0.0 | protein FAR1-RELATED SEQUENCE 1 isoform X1 | ||||
Refseq | XP_012092632.1 | 0.0 | protein FAR1-RELATED SEQUENCE 1 isoform X1 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A067J9C7 | 0.0 | A0A067J9C7_JATCU; Uncharacterized protein | ||||
STRING | VIT_01s0011g01470.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |