PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S12774.10

Common Name

JCGZ_16664

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 430aa MW: 50170.8 Da PI: 6.7949

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S12774.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.4	1.2e-28	48	135	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ + ++r++++++t+Cka+++vk++ dgkw ++++++eHnHel p Jcr4S12774.10 48 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPETDGS---NSRRSSVKKTDCKASMHVKRRPDGKWIIHEFVKEHNHELLP 135 5**************************************999877...889999******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-26	48	135	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-25	255	348	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MVDVMDEAQN GDGGVANYPK TAVAMFEEST DFEPGNGIEF ESHEAAYSFY QEYAKSMGFT 60 TSIKNSRRSK KSKEFIDAKF ACSRYGVTPE TDGSNSRRSS VKKTDCKASM HVKRRPDGKW 120 IIHEFVKEHN HELLPALAYH FRIHRNVKLA EKNNIDILHA VSERTRKMYV EMLRQSGGCQ 180 NFAFVQSDIN SQFEKGRHLA LDDGDAQALL EYFKRIKKEN PNFFYAIDLN EEQRLRNLFW 240 VDAKSRNDYI SFSDVVSFDT YYVKYHEKLP FAPFVGVNHH CQPILLGCAF VADESKLTFV 300 WLLKTWLRAL GGQAPKVIIT DMDKTLKAAI EEVFPNTRHC FSLWHILEKM SETLSHVIKR 360 HDDFLPEFHK CIFKSWTDEE FDMRWWTMVT QFELHDDEWI QSLYDDRKKW VPTYMGDTFL 420 AGISATQRSE

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MVDVMDEAQN GDGGVANYPK TAVAMFEEST DFEPGNGIEF ESHEAAYSFY QEYAKSMGFT  60
TSIKNSRRSK KSKEFIDAKF ACSRYGVTPE TDGSNSRRSS VKKTDCKASM HVKRRPDGKW  120
IIHEFVKEHN HELLPALAYH FRIHRNVKLA EKNNIDILHA VSERTRKMYV EMLRQSGGCQ  180
NFAFVQSDIN SQFEKGRHLA LDDGDAQALL EYFKRIKKEN PNFFYAIDLN EEQRLRNLFW  240
VDAKSRNDYI SFSDVVSFDT YYVKYHEKLP FAPFVGVNHH CQPILLGCAF VADESKLTFV  300
WLLKTWLRAL GGQAPKVIIT DMDKTLKAAI EEVFPNTRHC FSLWHILEKM SETLSHVIKR  360
HDDFLPEFHK CIFKSWTDEE FDMRWWTMVT QFELHDDEWI QSLYDDRKKW VPTYMGDTFL  420
AGISATQRSE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020537769.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X3
Refseq	XP_020537770.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X4
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A067KDU2	0.0	A0A067KDU2_JATCU; Uncharacterized protein
STRING	POPTR_0006s02140.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]