PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S12652.20

Common Name

JCGZ_03785

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB

Protein Properties

Length: 272aa MW: 30769.1 Da PI: 8.8073

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S12652.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.5	3.1e-18	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl Jcr4S12652.20 13 RGLWSPEEDEKLIKYITTYGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	50.9	3.5e-16	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++ E+++++d+++ lG++ W+ Ia++++ gRt++++k++w++ Jcr4S12652.20 66 RGSFSANEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 899*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-27	5	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.591	8	60	IPR017930	Myb domain
SuperFamily	SSF46689	9.77E-30	10	107	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-13	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-16	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	2.74E-11	16	60	No hit	No description
PROSITE profile	PS51294	25.141	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-25	64	116	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-14	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-14	66	109	IPR001005	SANT/Myb domain
CDD	cd00167	2.79E-10	68	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MGHRCCTKQK VKRGLWSPEE DEKLIKYITT YGHGSWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGSFS ANEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL 120 DPKTHNLIPS HQRANNKVVS NLPQSHQQPF PIISVNSSQM EIKKPIRTLP ADARNIETSV 180 APILASVDQN PNILWTVNDS IISSSSPSSL VVNPSGFGVL DENFYLGTNN TINIVEPFEP 240 PRLEVLQEQE QENLVKEKLD ESKGINDIDC FI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-31	13	115	7	108	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00350	DAP	Transfer from AT3G12720	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034653	0.0	KM034653.1 Jatropha curcas clone JcMYB033 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020533838.1	0.0	myb-related protein 308
TrEMBL	A0A067LA46	0.0	A0A067LA46_JATCU; MYB family protein
STRING	cassava4.1_025617m	1e-129	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3466	32	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	9e-89	myb domain protein 67

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]