PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S12421.30
Common NameJCGZ_20145, WRKY13
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 120aa    MW: 14142.8 Da    PI: 7.6733
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S12421.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.34e-1099120122
                    ---SS-EEEEEEE--TT-SS-E CS
           WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                    +dDg++WrKYG+K +k++++pr
  Jcr4S12421.30  99 MDDGFKWRKYGKKAIKNNTNPR 120
                    69*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-1084120IPR003657WRKY domain
SuperFamilySSF1182905.75E-894120IPR003657WRKY domain
PROSITE profilePS5081111.71594120IPR003657WRKY domain
PfamPF031063.7E-6100120IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MSDSQYSSFL ETDIPQNPNF NAHSSNSNAM NTSAINYQNL ELLDLMLAEE LEKDFTEFLS  60
QNPDSHQNQL RYEDEVKKRM KIEKRNKIAF RTKSMLEVMD DGFKWRKYGK KAIKNNTNPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4852651e-114KC485265.1 Jatropha curcas WRKY transcription factor 13 (WRKY13) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538821.13e-84probable WRKY transcription factor 45
TrEMBLS5CFR36e-83S5CFR3_JATCU; WRKY transcription factor 13
STRINGXP_002527106.12e-30(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.13e-14WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]