PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S12352.10
Common NameJCGZ_11816, LOC105640795
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 120aa    MW: 14115.4 Da    PI: 11.3555
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S12352.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+ll  +++ +G g W++++++ g++R++k+c++rw++yl
    Jcr4S12352.10 12 KGAWTPAEDDLLRSCIRIHGEGEWHKVPSRAGLNRCRKSCRLRWLNYL 59
                     79*********************************************7 PP

2Myb_DNA-binding47.54.1e-1565108146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T +E +l ++++ +lG++ W++Ia +++ gRt++++k++w++
    Jcr4S12352.10  65 RGEFTSDEIDLMIRLHSLLGNR-WSLIAGRLP-GRTANDVKNFWNT 108
                      899*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.194163IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-221062IPR009057Homeodomain-like
SMARTSM007171.7E-141161IPR001005SANT/Myb domain
SuperFamilySSF466893.87E-2711106IPR009057Homeodomain-like
PfamPF002491.6E-161259IPR001005SANT/Myb domain
CDDcd001675.16E-101459No hitNo description
Gene3DG3DSA:1.10.10.605.5E-2363114IPR009057Homeodomain-like
SMARTSM007178.2E-1364112IPR001005SANT/Myb domain
PROSITE profilePS5129417.14264114IPR017930Myb domain
PfamPF002492.5E-1365108IPR001005SANT/Myb domain
CDDcd001678.25E-967108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MKSPLPYRVL RKGAWTPAED DLLRSCIRIH GEGEWHKVPS RAGLNRCRKS CRLRWLNYLK  60
PDIKRGEFTS DEIDLMIRLH SLLGNRWSLI AGRLPGRTAN DVKNFWNTRM HKKLRLSNSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A4e-22121202109MYB3
3zqc_D4e-22121202109MYB3
3zqc_G4e-22121202109MYB3
3zqc_J4e-22121202109MYB3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347422e-66KM034742.1 UNVERIFIED: Jatropha curcas clone JcMYB123 MYB family protein-like gene, complete sequence.
GenBankKM0347432e-66KM034743.1 UNVERIFIED: Jatropha curcas clone JcMYB124 MYB family protein-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080577.12e-79transcription factor MYB114
SwissprotQ9FNV91e-53MY113_ARATH; Transcription factor MYB113
TrEMBLA0A067KGP84e-78A0A067KGP8_JATCU; MYB family protein
STRINGXP_009334453.11e-58(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.16e-56myb domain protein 113
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]