PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S12352.10 | ||||||||
Common Name | JCGZ_11816, LOC105640795 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 120aa MW: 14115.4 Da PI: 11.3555 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.5e-17 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ll +++ +G g W++++++ g++R++k+c++rw++yl Jcr4S12352.10 12 KGAWTPAEDDLLRSCIRIHGEGEWHKVPSRAGLNRCRKSCRLRWLNYL 59 79*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4.1e-15 | 65 | 108 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T +E +l ++++ +lG++ W++Ia +++ gRt++++k++w++ Jcr4S12352.10 65 RGEFTSDEIDLMIRLHSLLGNR-WSLIAGRLP-GRTANDVKNFWNT 108 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.194 | 1 | 63 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 10 | 62 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-14 | 11 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.87E-27 | 11 | 106 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-16 | 12 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.16E-10 | 14 | 59 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-23 | 63 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-13 | 64 | 112 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.142 | 64 | 114 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.5E-13 | 65 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.25E-9 | 67 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MKSPLPYRVL RKGAWTPAED DLLRSCIRIH GEGEWHKVPS RAGLNRCRKS CRLRWLNYLK 60 PDIKRGEFTS DEIDLMIRLH SLLGNRWSLI AGRLPGRTAN DVKNFWNTRM HKKLRLSNSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 4e-22 | 12 | 120 | 2 | 109 | MYB3 |
3zqc_D | 4e-22 | 12 | 120 | 2 | 109 | MYB3 |
3zqc_G | 4e-22 | 12 | 120 | 2 | 109 | MYB3 |
3zqc_J | 4e-22 | 12 | 120 | 2 | 109 | MYB3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034742 | 2e-66 | KM034742.1 UNVERIFIED: Jatropha curcas clone JcMYB123 MYB family protein-like gene, complete sequence. | |||
GenBank | KM034743 | 2e-66 | KM034743.1 UNVERIFIED: Jatropha curcas clone JcMYB124 MYB family protein-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012080577.1 | 2e-79 | transcription factor MYB114 | ||||
Swissprot | Q9FNV9 | 1e-53 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A067KGP8 | 4e-78 | A0A067KGP8_JATCU; MYB family protein | ||||
STRING | XP_009334453.1 | 1e-58 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 6e-56 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Entrez Gene | 105640795 |
Publications ? help Back to Top | |||
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