PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S11989.10

Common Name

JCGZ_15302

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HD-ZIP

Protein Properties

Length: 182aa MW: 21164.9 Da PI: 8.494

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S11989.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.5	8.2e-17	20	73	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++t+eq++ Le+ F n+++ e + +L+++lg++ rq+ +W+qN+Ra+++ Jcr4S11989.10 20 NKRRLTQEQVRLLERTFTTNKKLEPELKLQLSNQLGVPPRQIAIWYQNKRARWR 73 56789************************************************9 PP
2	HD-ZIP_I/II	105.4	4.4e-34	20	111	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krrl++eqv+lLE++F++++kLepe K +l+++Lg+ prq+a+W+qn+RAR++t+ lE dy++L+ ++++ + +++rLe+ev +L+eel++ Jcr4S11989.10 20 NKRRLTQEQVRLLERTFTTNKKLEPELKLQLSNQLGVPPRQIAIWYQNKRARWRTQSLELDYNTLQVKLENAVVDKRRLEREVLQLKEELRK 111 79**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.904	15	75	IPR001356	Homeobox domain
SMART	SM00389	3.1E-13	17	79	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.54E-16	17	84	IPR009057	Homeodomain-like
Pfam	PF00046	3.4E-14	20	73	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-17	21	82	IPR009057	Homeodomain-like
CDD	cd00086	1.27E-13	21	76	No hit	No description
PROSITE pattern	PS00027	0	50	73	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MDFFHTQNLQ KTQPKHQNNN KRRLTQEQVR LLERTFTTNK KLEPELKLQL SNQLGVPPRQ 60 IAIWYQNKRA RWRTQSLELD YNTLQVKLEN AVVDKRRLER EVLQLKEELR KVQEMLFSLN 120 HGIIPPPTHY HHHLPPNVSC NSSCDEGGSS SLHEDVNGEV LQLDELYACF IGSNGGVSSW 180 AS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012076694.2	1e-134	homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A067LF56	1e-133	A0A067LF56_JATCU; Uncharacterized protein
STRING	cassava4.1_030094m	2e-86	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11011	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	3e-44	homeobox protein 52

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]