PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S11965.20 | ||||||||
Common Name | JCGZ_19634, LOC105643824 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bZIP | ||||||||
Protein Properties | Length: 601aa MW: 65477.9 Da PI: 6.6046 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.4 | 4.3e-10 | 427 | 484 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK +i eLe kv++L++e ++L +l l+ + l+++ Jcr4S11965.20 427 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 484 9********************************************9998877666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.2E-18 | 423 | 487 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.737 | 425 | 488 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.2E-10 | 427 | 483 | No hit | No description |
SuperFamily | SSF57959 | 3.31E-11 | 427 | 478 | No hit | No description |
Pfam | PF00170 | 9.4E-9 | 427 | 481 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 3.97E-24 | 428 | 477 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MGDTEEASSE MMQRLQSSFG TTQSSSSMPK QPFSSLSQLD IPQLNQTQMR ARHFAHFAQN 60 FSSDSSKRVG IPPSHPNQIP PISPYSQIPV SRPANQQLGS QNFSPGPTHS RSLSQPSSFF 120 SLDALPPLSP APFRDSSSTS GSDPVSNDVS MEERDANSNS LLPPSPFNRG NTSRVGESLP 180 PRKAHRRSNS DIPFGFSNVM QSSPPLIPLR GSGVLERSVS GKENSGVAKP AQLVKREWER 240 GSDNSVEGMG ERKSEGEVVD DLFSAYMNLD NIDALNSSGT DDKNGNENRE DLDSRASGTK 300 TNGGDSSDNE AESSVNESGS SLPRAGLSSS TDKREGIKRS AGGDIAPTTR HYRSVSMDSF 360 MGKLNFGDES PKLPPSPGTR PGQLSPSNSI DGNAFSLEFG NGEFSGAELK KIMANEKLAE 420 IALTDPKRAK RILANRQSAA RSKERKMRYI SELEHKVQTL QTEATTLSAQ LTLLQRDSVG 480 LTNQNNELKF RLQAMEQQAQ LRDALNEALT AEVRRLKLAT AELGGDSDPT KGMVQHLSIN 540 PSMFQLQQQQ PSQLNIHQLQ QQQQQSPSQI NIHQLQQQQQ QHQPQPQQQN GSSTSNGESN 600 Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012084427.1 | 0.0 | transcription factor RF2a | ||||
TrEMBL | A0A067K743 | 0.0 | A0A067K743_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_004047m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2272 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 1e-149 | bZIP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105643824 |
Publications ? help Back to Top | |||
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